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ProteomicsEvaluation of transgenic proteins in transformed Camelina sativa leaves
The goal of this study was to detect and quantify the presence of transgenic proteins in transformed C. sativa plants. Experimental plants were transformed with recombinant proteins of a synthetic carbon fixation cycle. Plants expressing the full suite of genes of the synthetic cycle are labeled as ...
ORGANISM(S): Camelina sativa (False flax) (Myagrum sativum) 
2025-06-30 | PXD031909 | Pride
1d-lc Metaproteome Transgenic proteins Transformed plant Condensed rtca cycle Metaproteomics 
ProteomicsMetaproteomics to study metabolic handoffs in the Idas modiolaeformis symbiosis
The goal of this study was to identify the key functions of the six main symbionts that are hosted in gills of the marine bivalve, Idas modiolaeformis, which lives at deep-sea hydrocarbon seeps and wood falls in the Eastern Atlantic Ocean and the Mediterranean Sea. These symbionts include the main a...
ORGANISM(S): Bacteria Idas modiolaeformis 
2023-07-20 | PXD040273 | Pride
Mollusk Chemosynthesis Metaproteome Symbiosis Metagenomics Bacteria-animal symbiosis Bivalve Metagenome 1d-lc-ms/ms Deep-sea Metaproteomics 
ProteomicsCa. Thiodiazotropha symbionts of the deep-sea lucinid clam Lucinoma kazani are metabolically versatile.
The goal of this study was to identify the key functions of Candidatus Thiodiazotropha gloverae symbionts that are hosted in the gills of the lucinind clams, Lucinoma kazani, found at the deep-sea hydrocarbon seeps in the eastern Mediterranean Sea. These symbionts (Cromatiales, Sedimenticolaceae) ar...
ORGANISM(S): Candidatus Thiodiazotropha sp. Lucinoma kazani 
2025-05-26 | PXD051186 | Pride
Chemosynthesis 1d-lc Metaproteome Symbiosis Diazotrophs Metaproteomics 
ProteomicsIPD3, a transcription factor necessary to establish arbuscular mycorrhizal symbiosis affects immunity and metabolism of non-host Arabidopsis 65 million years after its evolutionary loss
The goal of this study was to detect and quantify the presence of transgenic proteins in transformed A. thaliana plants and overall gene expression responses to presence of IPD3. Experimental plants were transformed with 3 versions of the gene Interacting Protein of DMI3 (IPD3), a transcription fact...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-02-20 | PXD040665 | Pride
Symbiosis Immunity Transformed plant Mycorrhizae Defense Transgenic proteins 
ProteomicsDifferential proteomics of bacteria grown in vitro and in planta reveals genes used during growth on maize roots
Plant-associated microbial communities play a crucial role in plant health, yet the metabolism and physiology of bacteria in the rhizosphere remain poorly understood. In this study, we used seven bacterial species (Brucella pituitosa AA2, Chryseobacterium indologenes AA5, Curtobacterium pusillum AA3...
ORGANISM(S): Stenotrophomonas maltophilia Herbaspirillum robiniae Ochrobactrum pituitosum Enterobacter ludwigii Zea mays (Maize) Curtobacterium pusillum Pseudomonas putida Chryseobacterium indologenes 
2026-07-28 | PXD064252 | Pride
1d-lc Metaproteome Microbial physiology Maize Differential metaproteomics Plant-microbe interactions Metaproteomics 
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