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TranscriptomicsIdentification of re-capping substrates for the cytoplasmic capping enzyme complex
The analysis of capped RNAs by massively parallel sequencing has identified a large number of previously unknown transcripts, some of which are small RNAs and others are 5M-bM-^@M-^Y truncated forms of RefSeq genes. The latter may be generated by endonuclease cleavage or by stalling of Xrn1 at defi...
ORGANISM(S): Homo sapiens 
2012-12-20 | E-GEOD-36729 | biostudies-arrayexpress
ProteomicsCytoplasmic capping enzyme interactome
Formaldehyde crosslinking and Proximity-dependent biotinylation methods were applied to study the cytoplasmic capping enzyme interactome via 1D-LC-MS/MS. The raw data were searched against Uniprot human database modified to contain our designed protein sequences using the Thermo Proteome Discoverer ...
ORGANISM(S): Homo Sapiens (human) 
2018-08-30 | PXD010368 | JPOST Repository
ProteomicsFunctional Requirements for a Samd14-Capping Protein Complex in Stress Erythropoiesis
Acute anemia induces rapid expansion of erythroid precursors and accelerated differentiation to replenish erythrocytes. Paracrine signals – involving cooperation between SCF/c-Kit signaling and other signaling inputs – are required for the activation and function of erythroid precursors in anemia. O...
ORGANISM(S): Anemia Mus musculus (Mouse) 
2022-08-09 | PXD030467 | Pride
Samd14  capping protein  c-kit  erythropoietin  stress erythropoiesis 
ProteomicsMouse Stereocilia Capping Protein Immunoaffinity Purification
Capping protein controls stereocilia length and width during hair bundle development. To determine what other proteins are involved in capping protein regulation, we carried out immunoaffinity purifications targeted at either CAPZA or CAPZB2. The starting material for immunopurification was crude st...
ORGANISM(S): Mus musculus (Mouse) 
2017-08-25 | PXD006077 | Pride
Auditory Balance Vestibular Hair cells Stereocilia Hearing Actin Twinfilin Capz Hair bundle 
TranscriptomicsGenome-wide study of the MSL1 effect on gene expression and mRNA capping efficiency
Measurement of capping efficiency (by 5'CAP and 5'noCAP sequencing) in male (S2) and female (Kc) Drosophila melanogaster cells upon depletion of MSL1 by dsRNA compared to the eGFP RNAi control. The measurement of capping efficiency was combined with gene expression measurement by strand specific RNA...
ORGANISM(S): Drosophila melanogaster 
2023-09-30 | E-MTAB-2235 | biostudies-arrayexpress
UnknownPurification of capping protein using the capping protein binding site of CARMIL as an affinity matrix.
Not available
S-EPMC2713380 | biostudies-literature
ProteomicsProteomic insight into the interaction of Paenibacillus larvae with honey bee larvae before capping collected from an American foulbrood outbreak
The samples used in this study originated from colonies of managed European honey bees (A. mellifera) that were at the epicenter of an AFB outbreak in 2020. The colonies were officially examined by the State Veterinary Administration of the Czech Republic. For our analyses, we targeted brood samples...
ORGANISM(S): Paenibacillus Larvae Apis Mellifera 
2022-04-11 | MSV000089235 | MassIVE
TranscriptomicsThe eukaryotic translation initiation factor eIF4E elevates steady-state m7G capping of coding and noncoding transcripts
Methyl-7-guanosine (m7G) “capping” of coding and some noncoding RNAs is critical for their maturation and subsequent activity. Here, we discovered that eukaryotic translation initiation factor 4E(eIF4E), itself a cap-binding protein, drives the expression of the capping machinery and the increased c...
ORGANISM(S): Homo sapiens 
2020-09-30 | GSE158728 | GEO
GenomicsThe eukaryotic translation initiation factor eIF4E elevates steady-state m7G capping of coding and noncoding transcripts
The eukaryotic translation initiation factor eIF4E elevates steady-state m7G capping of coding and noncoding transcripts
PRJNA666357 | ENA
GenomicsFunctional association of Gdown1 with RNA Polymerase II in Human
Most human genes are loaded with promoter proximally paused RNA polymerase II (RNAP II) molecules that are poised for release into productive elongation by P-TEFb. Gdown1, a protein that renders RNAP II responsive to mediator, is involved in RNAP II elongation control. During in vitro transcription ...
ORGANISM(S): Homo sapiens 
2012-01-13 | E-GEOD-32442 | biostudies-arrayexpress
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