vcp/p97 - OmicsDI

Show results for

Unknown (289)
Transcriptomics (230)
Genomics (216)
Proteomics (66)
Metabolomics (16)
Other (3)
Models (2)

Organisms

Drosophila melanogaster (215)
Homo sapiens (84)
Malus domestica (23)
Mus musculus (22)
Drosophila simulans (7)
Drosophila yakuba (6)
Gallus gallus (6)
Salmo salar (5)
Drosophila pseudoobscura (4)
Arabidopsis thaliana (4)
Erwinia amylovora (3)
Sus scrofa (3)
Bos taurus (2)
Escherichia coli K-12 (2)
Pseudomonas aeruginosa (2)
Escherichia coli (2)
Rattus norvegicus (2)
Danio rerio (2)
unclassified Malus (1)
Bacteroides xylanisolvens (1)
Tremella fuciformis (1)
Microtus ochrogaster (1)
Prochlorococcus marinus str. NATL2A (1)
Acromyrmex echinatior (1)
Amphimedon queenslandica (1)
Rosa hybrid cultivar (1)
Pachycladon exile (1)
Escherichia coli O17 str. K12a (1)
Podospora anserina (1)
Monodelphis domestica (1)

Organisms

Homo sapiens (24)
Mus musculus (2)

Repository

biostudies-arrayexpress (384)
pride (48)
ENA (29)
geo (27)
MetaboLights (16)
MassIVE (11)
EGA (8)
iProX (4)
jPOST (2)
Cell Collective (1)
EVA (1)
FAIRDOMHub (1)
PeptideAtlas (1)

Tissue

Cell culture (19)
Permanent cell line cell (8)
Epithelial cell (5)
B cell (1)
Blood cell (1)
Bone cancer cell line (1)
Brain (1)
Cortex (1)
Egg (1)
Embryonic stem cell (1)
Fibroblast (1)
HeLa cell (1)
Liver (1)
Skeletal muscle (1)
Skeletal muscle fiber (1)
Whole body (1)

Disease

Colon cancer (3)
Normal (2)
Mock infected (1)
Infected (1)
IBDV infected (1)
Mastitis (1)
Chicken Anaemia Virus infected (1)
Alveolar soft part sarcoma (1)
Coronavirus infectious disease (1)
Dengue disease (1)
Frontotemporal dementia (1)
Huntington Disease (1)
Osteosarcoma (1)
Urinary bladder cancer (1)
Zika virus congenital syndrome (1)

Technology Type

Mass Spectrometry (48)
Shotgun proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (14)
Mass spectrometry (10)
Gel-based experiment (7)
Mass spectrometry assay (6)
Bottom-up proteomics (6)
Data-dependent acquisition (6)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
SWATH MS (2)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (14)
Illumina HiSeq 4000 (13)
Illumina HiSeq 3000 (9)
Illumina HiSeq 2000 (7)
NextSeq 500 (7)
ScanArray 5000 [PerkinElmer] (5)
Illumina HiSeq 2500 (5)
NextSeq 2000 (3)
Illumina MiSeq (3)
10X Genomics Chromium Controller (2)
Illumina NovaSeq X (2)
NextSeq 550 (2)
Orbitrap Fusion Lumos (2)
GeneTitan MultiChannel System (1)
GeneChip Clariom S mouse array cartridge and Affymetrix GeneTitan MultiChannel System (1)
GeneChip Pico Kit (Affymetrix/ThermoFisher) (1)
ReliaPrep RNA Miniprep System (Promega) (1)
Adipocyte Progenitor Isolation Kit (Miltenyi Biotec) (1)
NextSeq500 (1)
Ion Torrent S5 (1)
Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
Illumina Genome Analyzer (1)
GenePix 4000A [Axon Instruments] (1)
Illumina HiSeq2000 (1)
Illumina Genome Analyzer IIx (1)
NA (1)
Illumina HiSeq X (1)
N/A (1)
HiSeq X Ten (1)
Illumina (1)

Publication Date

2011 (75)
2010 (70)
2013 (52)
2023 (34)
2021 (30)
2022 (26)
2014 (24)
2016 (22)
2015 (20)
2012 (18)
2025 (16)
2024 (16)
2026 (14)
2018 (14)
2020 (13)
2009 (13)
2008 (11)
2017 (7)
2019 (5)
2007 (3)
2006 (3)
2005 (2)
2004 (1)

UNIPROT ID/AC

A0A9S2 (1)
A1X3T7 (1)
A2V8C3 (1)
A3QM97 (1)
A3QMB9 (1)
A3QMC5 (1)
A3QMC8 (1)
A4UVK2 (1)
A4UVL1 (1)
A5A8P5 (1)
A5A8Q9 (1)
A5HJZ7 (1)
A5HU97 (1)
A5HU98 (1)
A5HWB2 (1)
A5JYR8 (1)
A5JYT3 (1)
A5JYU1 (1)
A5JYU5 (1)
A5JYX3 (1)
A5JYX4 (1)
A5JYX8 (1)
A5JYX9 (1)
A5PEW5 (1)
A5PEX5 (1)
A5PEY0 (1)
A5PEY3 (1)
A5Z2S2 (1)
A5Z2S4 (1)
A5Z2T4 (1)

CHEBI ID

CHEBI:70976 (3)
CHEBI:18089 (3)
CHEBI:28299 (2)
CHEBI:75632 (2)
CHEBI:75643 (2)
CHEBI:28885 (2)
CHEBI:168901 (2)
CHEBI:168647 (2)
CHEBI:165782 (2)
CHEBI:87586 (2)
CHEBI:168687 (2)
CHEBI:81140 (2)
CHEBI:70478 (2)
CHEBI:15421 (2)
CHEBI:168278 (2)
CHEBI:168210 (2)
CHEBI:77168 (2)
CHEBI:79190 (2)
CHEBI:136629 (2)
CHEBI:168104 (2)
CHEBI:87335 (2)
CHEBI:168175 (2)
CHEBI:168589 (2)
CHEBI:167579 (2)
CHEBI:168243 (2)
CHEBI:87542 (2)
CHEBI:62898 (2)
CHEBI:37417 (2)
CHEBI:166521 (2)
CHEBI:138775 (2)

Metabolite Name

Phloretin (4)
Procyanidin B2 (3)
Procyanidin B1 (3)
Myricitrin (3)
(S)-9-Hydroxy-10-undecenoic acid (3)
Xi-7-Octen-2-ol (3)
Succinyladenosine (3)
Undecanedioic acid (3)
N-Acetyl-L-phenylalanine (3)
Azelaic acid (3)
Okanin 4'-(6''-p-coumarylglucoside) (2)
(E)-3-Nonen-1-ol (2)
1alpha,25-dihydroxy-20-epivitamin D2 / 1alpha,25-dihydroxy-20-epiergocalciferol (2)
Stoloniferone E (2)
Hexyl butyrate (2)
Hexyl octanoate (2)
6-Hydroxytricetin 6,4',5'-trimethyl eter 3'-rhamnoside (2)
Genistein 4'-O-glucoside (2)
Phloridzin (2)
Myricetin 3-alpha-L-arabinofuranoside (2)
Epigallocatechin 3-O-p-coumarate (2)
Corticrocin (2)
6-Hydroxykaempferol 7-glucoside (2)
Cis-p-Coumaroylcorosolic acid (2)
1-O-2'-Hydroxy-4'-methoxycinnamoyl-b-D-glucose (2)
(-)-epicatechin-3'-O-glucuronide (2)
(1S,2R,4R,8S)-p-Menthane-2,8,9-triol 9-glucoside (2)
Butyl butyryllactate (2)
Myricetin 3-glucoside (2)
7-oxo-11E-Tetradecenoic acid (2)

First Public Date

2023 (15)
2026 (3)
2025 (3)
2020 (2)
2014 (2)
2022 (1)
2021 (1)
2019 (1)
2015 (1)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

ChIP-seq (160)
Transcription profiling by array (97)
RNA-seq of coding RNA (54)
RNA-seq of non coding RNA (11)
ChIP-chip by tiling array (9)
Comparative genomic hybridization by array (6)
ATAC-seq (6)
ChIP-chip by array (5)
DNA-seq (5)
Unknown experiment type (4)
Animal - High-throughput sequencing (4)
MicroRNA profiling by high throughput sequencing (3)
Hi-C (3)
RNA-seq of coding RNA from single cells (3)
High-throughput sequencing (2)
4C (2)
Methylation profiling by high throughput sequencing (2)
Animal - One-color microarray (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
ScATAC-seq (1)
CUT&RUN (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2011 (83)
2010 (76)
2013 (59)
2022 (47)
2021 (38)
2016 (37)
2023 (36)
2024 (32)
2014 (31)
2019 (30)
2012 (29)
2017 (26)
2015 (24)
2020 (22)
2025 (20)
2018 (18)
2009 (16)
2008 (15)
2026 (8)
2006 (8)
2007 (5)
2005 (4)
2004 (2)
2003 (2)
2002 (1)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (3)
BBE, Tsui-Fen Chou's lab, Caltech, USA (3)
BBE, Caltech (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
center for biochemistry, University of cologne (2)
Biology department, Stanford, USA (1)
CECAD/Institute for Genetics, University of Cologne, Cologne, Germany (1)
CHU de Quebec Research Center-Laval University 2705 Laurier Blvd., Quebec (QC), Canada G1V 4G2 Phone: (418) 525-4444, ext. 47608; Fax: (418) 654-2715 (1)
CRUK/MRC Oxford Institute for Radiation Oncology, Department of Oncology, University of Oxford, Oxford OX3 7DQ, UK (1)
California Institute of Technology (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Cancer Research UK and Medical Research Council Oxford Institute for Radiation Oncology, Department of Oncology, University of Oxford, Oxford, OX3 7DQ, UK (1)
Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK (1)
Chair of Biochemistry I, Biocenter, University of Wuerzburg (1)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (1)
Chromosomal Replication Laboratory, Institute for Cancer and Genomic Sciences, IBR west, WX2.67, University of Birmingham, Edgbaston, Birmingham, B15 2TT (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Immunology and Regenerative Biology, The Weizmann Institute of Science, Rehovot, 7610001, Israel (1)
Department of Medical Genetics, Cambridge Institute for Medical Research, The Keith Peters Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, United Kingdom (1)
Department of Nutritional Sciences and Toxicology University of California, Berkeley Berkeley, CA (1)
Dept. of Biological Chemistry,The Alexander Silberman Institute of Life Science, The Hebrew University of Jerusalem,Givat Ram Campus, Jerusalem, 91904, Israel (1)
Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, United States (1)
Dr. Pietro Scaturro, Systems Arbovirology, Leibniz Institute of Virology, Hamburg, Germany (1)
Harvard Medical Schol Department of Cell Biology Boston, MA 02115 USA (1)
Harvard Medical School Department of Cell Biology Boston MA, USA (1)
Institute for Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham B15 2TT UK (1)
Institute of Biomedical Sciences, Academia Sinica (1)
Justus Liebig University Giessen Department of Anatomy and Cell Biology Aulweg 123 35392 Giessen (1)
Max-Planck Institute of Biochemistry, Department of Cellular Biochemistry (1)

Previous page
1 / 83
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 83
Next page

Sort by:

Relevance

Page size

The differentiation/retrodifferentiation program of human U937 leukemia cells is accompanied by changes of VCP/p97

A possible functional role of VCP/p97 during differentiation of U937 cells was addressed by siRNA-targeting of VCP/p97. Functional changes in VCP-siRNA-transfected cells following phorbol ester-induced monocytic differentiation have been examind by DNA microarray analysis. Cells transfected with the...

ORGANISM(S): Homo sapiens

2010-06-29 | E-GEOD-9821 | biostudies-arrayexpress

RNAi knock down of VCP in human HeLa cells

Study of the effects of the VCP knockdown. VCP (p97, yeast cdc48) is a hexameric AAA ATPase involved in various cellular functions including degradation of proteins by the ubiquitin-proteasome system. We examine the consequences of the reduction of VCP levels after RNAi of VCP in HeLa cells. We find...

ORGANISM(S): Homo sapiens

2006-08-23 | E-MEXP-817 | biostudies-arrayexpress

BTG3-dependent VCP/p97 nuclear translocation is required for efficient repair of UV-induced DNA lesions

Skin exposure to ultraviolet (UV) rays from sunlight results in the formation of mutagenic DNA photolesions that are repaired by the nucleotide excision repair (NER) machinery. The inefficient repair of photolesions can lead to stalled DNA replication and mispairing, thereby causing strand breaks an...

ORGANISM(S): Homo sapiens (Human)

2025-07-14 | PXD056446 | Pride

Phosphorylation Lc-ms/ms

VCF1 is a p97/VCP cofactor promoting recognition of ubiquitylated p97-UFD1-NPL4 substrates

The hexameric AAA+ ATPase p97/VCP functions as an essential mediator of ubiquitin-dependent cellular processes, extracting ubiquitylated proteins from macromolecular complexes or membranes by catalyzing their unfolding. p97 is directed to ubiquitylated client proteins via multiple cofactors, most of...

ORGANISM(S): Homo sapiens (Human)

2024-03-14 | PXD043563 | Pride

Fam104a Vcf Vcp Ubiquitin P97

p97/VCP is required for piecemeal autophagy of aggresomes

Metazoan cells adapt to the exhaustion of protein quality control (PQC) systems by sequestering aggregation-prone proteins in large, pericentriolar structures termed aggresomes. Defects in both, aggresome formation and clearance affect proteostasis and have been linked to neurodegenerative diseases,...

ORGANISM(S): Homo sapiens (Human)

2025-04-14 | PXD053581 | Pride

Aggrephagy Proximity proteomics Turboid Protein quality control Tax1bp1 P97/vcp Piecemeal autophagy

Functional characterization of the p97/valosin-containing protein (VCP) interacting network in Leishmania Functional characterization of the p97/valosin-containing protein (VCP) interacting network in Leishmania

Valosin‐containing protein (VCP)/p97/Cdc48 is an essential AAA+ ATPase associated with many ubiquitin-dependent cellular pathways that plays a central role in protein quality control in all eukaryotes. Its functional diversity relies on its ability to cooperate with a large number of protein cofacto...

ORGANISM(S): Leishmania infantum JPCM5

2020-08-06 | PXD013731 | Pride

Leishmania vcp/p97 vcp cofactors co-immunoprecipitation lc-ms/ms network proteomics

The differentiation/retrodifferentiation program of human U937 leukemia cells is accompanied by changes of VCP/p97

ORGANISM(S): Homo sapiens

2008-01-23 | GSE9821 | GEO

p97/VCP promotes the recycling of endocytic cargo

The endocytic pathway is of central importance for eukaryotic cells, as it enables uptake of extracellular materials, membrane protein quality control and recycling, as well as modulation of receptor signaling. While the ATPase p97 (VCP, Cdc48) has been found to be involved in the fusion of early en...

ORGANISM(S): Homo sapiens (Human)

2023-09-28 | PXD041169 | Pride

Myof Myoferlin Vcp Cdc48 P97 Rab11

Apple miRNAs and tasiRNAs with novel regulatory networks

Background miRNAs and their regulatory functions have been extensively characterized in model species but whether apple has evolved similar or unique regulatory features remains unknown. Results We performed deep sRNA-seq and identified 23 conserved, 10 less-conserved and 42 apple-specific miRNAs o...

ORGANISM(S): Malus x domestica

2012-05-29 | E-GEOD-36065 | biostudies-arrayexpress

p97/VCP targets Toxoplasma gondii vacuoles for parasite restriction in interferon-stimulated cells

Infection with the parasite Toxoplasma gondii leads to production of interferon gamma (IFN) that stimulates cells to upregulate defence proteins targeting the parasite for cell intrinsic elimination or growth restriction. Various host defence mechanisms operate at the parasitophorous vacuole (PV) in...

ORGANISM(S): Toxoplasma gondii PRU Toxoplasma gondii Homo sapiens (Human)

2023-11-15 | PXD042937 | Pride

Innate immunity Ubxd1 Ankrd13a Toxoplasma gondii P97/vcp Parasitophorous vacuole Ubiquitin

Previous page
1 / 83
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 83
Next page

Sort by:

Relevance

Page size

822 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets