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ProteomicsmRNA-binding proteins of Leishmania donovani LC-MSMS
Leishmania are unicellular eukaryotes responsible for leishmaniasis in humans. Like other trypanosomatids, leishmania regulate protein coding gene expression almost exclusively at the post-transcriptional level with the help of RNA binding proteins (RBPs). Due to the presence of polycystronic trans...
ORGANISM(S): Leishmania donovani 
2017-02-08 | PXD005601 | Pride
Lc-msms Mrna-binding proteins Leishmania donovani Interactome capture 
ProteomicsHeLa mRNA interactome
Pull-down of poly(A)-mRNA cross linked proteins using two cross-linking methods (conventional cross-linking and PAR-cross-linking) to identify all mRNA-binding proteins (GO:0003729). The provided data is quantitative proteomic data for comparison of cross-linking and control samples.
ORGANISM(S): Homo sapiens 
2012-08-14 | E-MTAB-869 | biostudies-arrayexpress
ProteomicsRNA interactome capture identifies key proteins for herpesviral gene expression
The primary mRNA sequence determines its secondary structure and the repertoire of interacting RNA binding proteins (RBPs). The resulting mRNA ribonucleoprotein complex (mRNP) then influences all stages of the life of an mRNA. Here, we determined the mRNP composition of individual Kaposi Sarcoma Her...
ORGANISM(S): Homo sapiens (Human) Human gammaherpesvirus 8 
2026-01-23 | PXD056253 | Pride
Kshv Au-rich sequences Srsf3 Rna-binding-proteins Rna interactome capture Rna stability Codon optimization Herpesviral gene expression Rbps Lytic transcripts Orf57 
OtherInsights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Data from ProteomeXchange, PXD ID: PXD002880. Experiment: KS_A4_3, file: folder summary. Published as part of Cell. 2012 Jun 8;149(6):1393-406 . From the Abstract: {{i}} RNA-binding proteins (RBPs) determine RNA fate from synthesis to decay. Employing two complementary protocols for covalent UV cro...
ORGANISM(S): Homo_sapiens_viruses, Human_female 
GPM11210041750 | GPMDB
Resource Reanalysis 
GenomicsCapture and identification of the eIF4E:mRNA interactome in human cells
Capture and identification of the eIF4E:mRNA interactome in human cells
PRJNA576078 | ENA
ProteomicsmRNA binding - Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
RNA-binding proteins (RBPs) determine RNA fate from synthesis to decay. Employing two complementary protocols for covalent UV crosslinking of RBPs to RNA, we describe a systematic, unbiased, and comprehensive approach, termed "interactome capture," to define the mRNA interactome of proliferating hum...
ORGANISM(S): Homo sapiens (Human) 
2015-09-11 | PXD002880 | Pride
Mrna binding 
UnknownComprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture.
Not available
S-EPMC5279761 | biostudies-literature
GenomicsRNA interactome capture identifies key proteins for herpesviral gene expression
RNA interactome capture identifies key proteins for herpesviral gene expression
PRJNA1065267 | ENA
ProteomicsA unique mRNA decapping complex in trypanosomes
Removal of mRNA 5’ caps primes transcripts for degradation and is central for regulating gene expression in eukaryotes. The canonical decapping enzyme DCP2 is stringently controlled by assembly into a dynamic multi-protein complex together with the 5´-3´exoribonuclease Xrn1. Kinetoplastida lack DCP2...
ORGANISM(S): Trypanosoma brucei 
2023-06-14 | PXD038550 | Pride
Xrna Mrna decay Apah-like phosphatase Alph1 Mrna decapping Trypanosoma Exoribonuclease 
ProteomicsRNA interactome capture in Escherichia coli globally identifies RNA-binding proteins
RNA-binding proteins (RPBs) are deeply involved in many fundamental cellular processes in bacteria and are vital for their survival. Despite this, few studies have so far been dedicated to globally identifying bacterial RBPs. We have adapted the RNA interactome capture (RIC) technique, originally de...
ORGANISM(S): Escherichia coli 
2023-03-30 | PXD032939 | Pride
Lc-ms Rna interactome capture Escherichia coli 
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