Orbital ion trap

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Proteomics (86)
Metabolomics (17)
Unknown (16)
Transcriptomics (4)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (82)
Allexis (82)
Apostichopus japonicus (82)
Canis lupus familiaris (82)
Carya cathayensis (82)
Clostridioides difficile 630 (82)
Cyanophora paradoxa (82)
Ensifer adhaerens (82)
Enterococcus faecalis (82)
Globicatella sanguinis (82)
Histomonas meleagridis (82)
Human immunodeficiency virus 1 (82)
Listeria monocytogenes (82)
Marchantia polymorpha (82)
Methylohalobius crimeensis 10Ki (82)
Mus musculus (82)
Mycobacterium tuberculosis (82)
Ophrys garganica (82)
Ophrys sphegodes (82)
Pseudomonas aeruginosa SJTD-1 (82)
Pseudomonas putida KT2440 (82)
Rattus norvegicus (82)
Rhizobium sp. Leaf68 (82)
Schizosaccharomyces pombe 927 (82)
Schizosaccharomyces pombe 972h- (82)
Shigella (82)
Mus musculus (3)
Fusarium oxysporum f. sp. niveum (1)
Rattus norvegicus (1)
Homo sapiens (1)

Repository

pride (82)
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biostudies-arrayexpress (4)
jPOST (2)
MassIVE (2)

Tissue

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Placenta (1)

Disease

Acute leukemia (3)
Breast cancer (2)
Cervix carcinoma (2)
Lung cancer (2)
Melanoma (2)
Non-small cell lung carcinoma (2)
Atypical teratoid rhabdoid tumor (1)
Brain cancer (1)
Disease free (1)
Idiopathic pulmonary fibrosis (1)
Lymphoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (82)
Shotgun proteomics (52)
Mass spectrometry (15)
Bottom-up proteomics (12)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
Gel-based experiment (7)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (4)
Data-dependent acquisition (3)
HDMSE (3)
Mass spectrometry assay (2)
Mass spectrometry imaging (2)
SWATH MS (2)
Metaproteomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - negative - HILIC (2)
Liquid Chromatography MS - positive - HILIC (2)
Orbitrap Fusion Lumos (1)
Q Exactive Hybrid Quadrupole-Orbitrap (1)
LTQ Classic (Thermo Scientific) (1)
Liquid Chromatography MS – negative - reverse phase (1)
TSQ Quantum XLS (Thermo Scientific) (1)
Gas Chromatography MS - (1)
LTQ Orbitrap Classic (Thermo Scientific) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
API 4000 QTRAP (AB Sciex) (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2022 (18)
2025 (15)
2026 (11)
2021 (11)
2023 (8)
2024 (7)
2017 (7)
2019 (6)
2018 (5)
2016 (4)
2014 (4)
2020 (4)
2008 (2)
2004 (1)
2015 (1)

CHEBI ID

CHEBI:16040 (4)
CHEBI:16335 (4)
CHEBI:16708 (4)
CHEBI:15741 (4)
CHEBI:27897 (4)
CHEBI:17295 (4)
CHEBI:16828 (4)
CHEBI:16742 (3)
CHEBI:27570 (3)
CHEBI:16610 (3)
CHEBI:16857 (3)
CHEBI:44747 (3)
CHEBI:16865 (3)
CHEBI:15729 (3)
CHEBI:17154 (3)
CHEBI:28044 (3)
CHEBI:16856 (3)
CHEBI:30763 (3)
CHEBI:18211 (3)
CHEBI:29016 (3)
CHEBI:16709 (3)
CHEBI:17256 (3)
CHEBI:17750 (3)
CHEBI:17562 (3)
CHEBI:12962 (3)
CHEBI:16393 (3)
CHEBI:28300 (3)
CHEBI:16235 (3)
CHEBI:16411 (3)
CHEBI:17482 (3)

Metabolite Name

Stearic acid (3)
D-glyceraldehyde-3-phosphate (2)
Testolic acid (2)
Juniperic acid (2)
D-erythrose-4-phosphate (2)
Juvenile hormone III (2)
Phosphoric acid (2)
Adenine (2)
12,13-DiHOME (2)
Fumarate (2)
Succinate (2)
Myristamide (2)
L-threonine (2)
L-phenylalanine (2)
L-ornithine (2)
3beta-hydroxy-4beta-methyl-5alpha-cholest-7-ene-4alpha-carboxylic acid (2)
Cis-5-Tetradecenoylcarnitine (2)
Alpha-Linolenic acid (2)
Tetranor-12R-HETE (2)
Phytosphingosine (2)
Oleamide (2)
Azelaic acid (2)
Oleic acid (2)
Palmitic acid (2)
Myristic acid (2)
L-Tyrosine (2)
Oxalate (1)
L-alpha-aminoadipate (1)
Glucitol (1)
D-erythrose (1)

Study type

Transcription profiling by array (3)
RNA-seq of non coding RNA (1)

Release Date

2024 (4)
2025 (3)
2008 (2)
2022 (2)
2020 (2)
2016 (1)
2004 (1)
2023 (1)
2021 (1)
2019 (1)
2018 (1)
2015 (1)

Lab affiliation

Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (7)
Evolutionary and translational venomics Lab, Instituto de Biomedicina de Valencia, CSIC (3)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center (3)
Department of Molecular Cell Biology, Institute of Biochemistry, Splaiul Independentei 296, 060031 Bucharest 17, Romania (2)
The Scripps Research Institute Department of Molecular Medicine (2)
University of Edinburgh, Institute of Genetics and Molecular Medicine, Edinburgh, Scotland, United Kingdom, EH4 2XR (2)
"Mitochondria, Metals and Oxidative Stress" group leader Head "Mass Spectrometry Lab and Proteomics core Facility" Jacques Monod Institute UMR7592 CNRS - Paris Diderot University 15 rue Hélène Brion 75205 Paris Cedex 13, FRANCE tel : 33(1)57278029 (1)
1Department of Medicine, University of Minnesota, 420 Delaware Street, SE, Minneapolis, Minnesota 55455, USA (1)
1Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, UK (1)
Andalusian Center for Grape and Grapevine Research. CeiA3. Marine and Environmental Sciences Faculty. University of Cadiz. Puerto Real, 11510, Cádiz, Spain. (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
Bioprocess Engineering, Otto von Guericke University Magdeburg, Universitätsplatz 2, D-39106 Magdeburg, Germany (1)
CIISA - Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Lisboa, Portugal (1)
Centre for Environmental Biotechnology, Bangor University, Deiniol Rd, Bangor, LL57 2UW, UK School of Natural Sciences, Bangor University, Deiniol Rd, Bangor, LL57 2UW, UK (1)
Centre for Translational Pharmacology, Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK (1)
Department of Anatomy and Neurobiology Virginia Commonwealth University Richmond, VA 23298-0709 USA (1)
Department of Anatomy and Neurobiology, School of Medicine, Virginia Commonwealth University, Richmond, VA USA (1)
Department of Biochemistry and Pharmacology, The University of Melbourne, VIC 3010. Australia; Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, VIC 3010. Australia (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, D-17489 Greifswald, Germany (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (1)
Department of Microbial Proteomics, University of Greifswald, 17489 Greifswald, Germany (1)
Department of Molecular Biology and Genetics, Aarhus University, Denmark (1)
Department of Molecular Medicine The Scripps Research Institute (1)
Department of Molecular Medicine The Scripps Research Institute (1)
Direktor Institut für Neuroanatomie und Zellbiologie Medizinische Hochschule Hannover (MHH) (1)
Discovery Proteomics Facility, University of Oxford (1)
Ecology and Evolutionary Biology, University of Kansas USA (1)
Edinburgh Cancer Research Centre, Cell Signalling Unit, University of Edinburgh (1)
Finley and Gygi lab Cell Biology Department Harvard Medical School US (1)
Finley and Gygi labs, Cell Biology Department, Harvard Medical School, US (1)

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Analysis of Human Plasma by LC-MSMS and Orbital Ion Trap

Identification of human plasma by LC-MSMS with orbital ion trap after collection over quaternary amine resin and digestion with trypsin.

ORGANISM(S): Homo sapiens (Human)

2025-05-07 | PXD055594 | Pride

Transcription profiling time series of rat retina after intra-orbital nerve transection, intra-orbital nerve crush or no treatment

Array experiment: Animals were divided into a control group (naive), which did not undergo any experimental manipulation (n=20) and two experimental groups, one receiving an intra-orbital nerve transection (IONT, n=60) and the other an intra-orbital nerve crush (IONC, n=60) Sterile precautions were ...

ORGANISM(S): Rattus norvegicus

2008-06-14 | E-MEXP-1387 | biostudies-arrayexpress

Insight into the protein composition of immunoglobulin light chain deposits of eyelid, orbital, and conjunctival amyloidosis.

Amyloidosis is a disorder characterized by the formation of extracellular amyloid deposits. Immunoglobulin light-chain amyloidosis the most common form of amyloidosis can appear as a local disorder presented with mild symptoms or as a life threatening systemic disease. Identification of the protein...

ORGANISM(S): Homo sapiens (Human)

2014-05-29 | PXD000743 | Pride

Mass spectrometry Orbit Amyloidosis Conjunctiva Laser capture microdissection Eyelid

Detection of the 5p - 4f orbital crossing and its optical clock transition in Pr⁹.

Not available

S-EPMC6906385 | biostudies-literature

Effect of Juvenile Environmental Tobacco Smoke Exposure on the Rat Frontal Cortex Neuroproteome

Exposure to secondhand tobacco smoke during early childhood has been linked with an increased risk for behavioral disorders, yet little is known regarding how brain development is impacted. Using an environmental tobacco smoke (ETS) passive inhalation model, this study assesses the neurodevelopmenta...

ORGANISM(S): Rattus norvegicus (Rat)

2018-12-17 | PXD011744 | Pride

Tobacco Juvenile Hdmse Neuroproteome Rat Brain Frontal Secondhand smoke Cortex Development

Effect of Juvenile Environmental Tobacco Smoke Exposure on the Rat Frontal Cortex Neuroproteome

ORGANISM(S): Rattus norvegicus (Rat)

2020-05-26 | PXD007690 | Pride

Tobacco Juvenile Hdmse At Neuroproteome Brain Frontal Secondhand smoke Cortex Development

Mass Spectrometric Identification of Proteins Enhanced by the Atomic Force Microscopy Immobilization Surface.

Not available

S-EPMC7795915 | biostudies-literature

HILIC-ESI-FTMS with All Ion Fragmentation (AIF) Scans as a Tool for Fast Lipidome Investigations.

Not available

S-EPMC7287777 | biostudies-literature

Mass spectrometry study of the adduct formed by F-ALDH with thiram

F-ALDH is a recently characterized psychrophilic aldehyde dehydrogenase from Flavobacterium PL002. Thiram was shown to inhibit its enzymatic activity, yet the mechanism of inhibition is unknown. We have used low flow liquid chromatography (nanoLC) coupled to tandem mass spectrometry (MS/MS) to study...

ORGANISM(S): Flavobacterium sp. PL002

2025-10-24 | PXD066425 | Pride

Enzyme inhibition Aldehyde dehydrogenase Mass spectrometry Thiram

Europium Ion-Based Magnetic-Trapping and Fluorescence-Sensing Method for Detection of Pathogenic Bacteria.

Not available

S-EPMC11007678 | biostudies-literature

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123 Results

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