Sort   by:  
 Page size 
ProteomicsLC-MS/MS analysis of terminating spliceosomes
In this project, we investigated how the spliceosome bound to an excised intron-lariat is remodeled and how the associated intron-lariat is debranched during the process collectively known as spliceosome termination. We used a native pulldown from a C. elegans strain carrying an endogenous tag on th...
ORGANISM(S): Homo sapiens (Human) Caenorhabditis elegans 
2026-08-19 | PXD081218 | Pride
Human Yju2b Cwf19l1 Leng1 C. elegans Hek293t cells K562 cells Dhx35 Spliceosome Prp19 Dbr1 
ProteomicsBioID2 interactome of wild-type SYCP1 versus the D918–942 mutant
This dataset comprises a tandem mass tag (TMT)–based quantitative proteomic analysis of proteins proximal to SYCP1 identified using BioID proximity labelling. Two independent BioID experiments were performed using distinct SYCP1 constructs: an N-terminal Myc-tagged SYCP1 and a C-terminal HA-tagged S...
ORGANISM(S): Homo sapiens (Human) 
2026-04-30 | PXD072359 | Pride
Sycp1  bioid  proximity labeling 
ProteomicsProximity labeling – LC/MS-MS with TurboID-ATG8e/atg2-1 Arabidopsis seedlings
By employing a proximity labeling approach using Arabidopsis ATG8e tagged with TurboID as bait in atg2-1 background, we discovered a protein family of unknown function, consisting of two homologs (AT4G02880 and AT1G03290). Both proteins contain coil-coiled domains that are predicted to be closely re...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-10-07 | PXD067352 | Pride
Turboid Vesicle secretion Ap-ms 
ProteomicsBioID proximity proteomics of wild-type and ΔPDZ DVL2 in HEK293 Flp-In T-REx cells
This dataset supports a study investigating how the PDZ domain of Dishevelled-2 (DVL2) specifies β-catenin-independent Wnt signalling outputs. BioID proximity labelling was performed in HEK293 Flp-In T-REx cells stably expressing BirA*-tagged wild-type DVL2 or a matched DVL2 mutant lacking the PDZ d...
ORGANISM(S): Homo sapiens (Human) 
2026-09-12 | PXD079793 | Pride
Bioid  proximity labelling  proximity proteomics  dvl2  dishevelled  pdz domain  daple  girdin  girdin-l  wnt signalling  wnt5a  primary cilia  basal body  pdz-pbm interaction  lc-ms/ms  bottom-up proteomics  data-dependent acquisition  hek293 flp-in t-rex 
UnknownJuvenile Atlantic sturgeon survival and movement in proximity to an active cutterhead suction dredge.
Not available
S-EPMC11602117 | biostudies-literature
TranscriptomicsMapping the FOXA1 Interactome in ER+ Breast Cancer Cells using Proximity Labeling Reveals Novel Interactions with the Orphan Nuclear Receptor NR2C2 [RNA-Seq]
FOXA1 is a pioneer transcription factor essential for chromatin accessibility and transcriptional regulation in hormone-driven cancers. In breast cancer, FOXA1 plays a central role in facilitating nuclear receptor binding, reprogramming enhancer landscapes, and promoting transcriptional changes asso...
ORGANISM(S): Homo sapiens 
2025-09-01 | GSE299760 | GEO
GenomicsMapping the FOXA1 Interactome in ER+ Breast Cancer Cells using Proximity Labeling Reveals Novel Interactions with the Orphan Nuclear Receptor NR2C2
FOXA1 is a pioneer transcription factor essential for chromatin accessibility and transcriptional regulation in hormone-driven cancers. In breast cancer, FOXA1 plays a central role in facilitating nuclear receptor binding, reprogramming enhancer landscapes, and promoting transcriptional changes asso...
ORGANISM(S): Homo sapiens 
2025-09-01 | GSE287088 | GEO
ProteomicsProteomic profiling of Arid3a 3′UTR-associated proteins using MS2-MCP-TurboID proximity labeling
This project contains LC-MS/MS proteomic data generated from an MS2-MCP-TurboID proximity labeling experiment designed to identify proteins enriched in the proximity of the Arid3a 3′UTR. Cells expressing MS2-tagged Arid3a 3′UTR and MCP-TurboID were subjected to biotin labeling, streptavidin enrichme...
ORGANISM(S): Homo Sapiens 
2026-06-23 | PXD080101 |
ProteomicsMapping of the hSOX10 protein interactome in human melanoma
The transcription factor SOX10 is a central regulator of melanoma biology, influencing tumor initiation, progression, phenotypic plasticity, and therapeutic resistance. However, the molecular mechanisms underlying these diverse functions remain incompletely understood. To elucidate the protein-prote...
ORGANISM(S): Homo sapiens (Human) 
2026-06-15 | PXD067868 | Pride
Interactome mapping Mass spectrometry Miniturbo Melanoma Proximity-based biotinylation Protein-protein interactions Hsox10 
ProteomicsLC-MSMS of cell secretome for MAP1LC3B interactors
Description Growing evidence implicates autophagy in cell secretion. Identifying the repertoire of proteins involved with autophagy dependent secretions is key for understanding the underlying mechanism. We initially use a proximity-dependent biotinylation proteomics strategy to label protein that e...
ORGANISM(S): Homo sapiens (Human) 
2020-01-09 | PXD015479 | Pride
Autophagy Proximity-tagged ms Exosome Bira Secretome 
Sort   by:  
 Page size