Sort   by:  
 Page size 
ProteomicsMetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses
Interpreting proteomics data remains challenging due to the large number of proteins that are quantified by modern mass spectrometry methods. Weighted gene correlation network analysis (WGCNA) can identify groups of biologically related proteins using only protein intensity values by constructing pr...
ORGANISM(S): Homo sapiens (Human) 
2022-01-27 | PXD030784 | Pride
Cancer Analysis Proteomics Prostate Network Human 
ProteomicsYeast Multiplexed HyCCAPP
Bottom-up proteomics data from a study of proteins associated with yeast's ribosome biogenesis and stress response genes (four genomic loci: 25S rDNA, ARX1, CTT1 and RPL30), using multiplexed HyCCAPP (Hybridization Capture of Chromatin-Associated Protein for Proteomics). Data include spectra from 4 ...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2017-05-08 | MSV000081066 | MassIVE
ProteomicsDiscovery of dehydroamino acids and their crosslinks in Alzheimer's Disease
Alzheimer’s disease is characterized by the accumulation of protein aggregates. Dehydroamino acids are rarely observed posttranslational modifications that contain an electrophilic alkene capable of forming protein-protein crosslinks, which may lead to protein aggregation. We used mass spectrometry-...
ORGANISM(S): Homo sapiens (Human) 
2025-03-06 | PXD053814 | Pride
Crmp2 Alzheimer's disease Tau Gapdh Dehydroamino acids Crosslinks 
ProteomicsProtein turnover during in vitro human vocal fold mucosa remodeling
We present here the first study evaluating the dynamic proteome changes in the remodeling process of decellularized tissue by reseeded cells using vocal fold mucosa as the model system.
ORGANISM(S): Homo sapiens (Human) 
2016-01-06 | PXD002734 | Pride
Silac Orbitrap Human Vocal fold mucosa 
ProteomicsElucidating the RNA-protein Interactomes of Target RNAs in Tissue
Raw mass spec files for the protein interactomes of MALAT1, polyadenylated RNA, and scrambled controls in mouse liver and patient derived prostate tumor xenografts XG147 and XG77 as determined by HyPR-MS.
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2023-07-30 | PXD038809 | Pride
Malat1 Proteomics Mass spectrometry Hybridization Lncrna Rna metabolism Interactome Rna binding proteins 
ProteomicsFractionated Human/E. coli Benchmark Data Set
This benchmark data set is composed of two groups of fractionated samples. The first group contained a mixture of E. coli and human digest, and the second group contained a similar mixture except that the amount of E. coli was twice the amount as the first group.
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2020-04-06 | PXD016470 | Pride
Proteomics E. coli Benchmark Technical 
ProteomicsImproved detection of differentially abundant proteins through FDR-control of peptide-identity-propagation
We present a method for FDR control of PIP, called “PIP-ECHO” (PIP Error Control via Hybrid cOmpetition) and devise a rigorous protocol for evaluating FDR control of any PIP method. Using three different datasets, we evaluate PIP-ECHO alongside the PIP procedures implemented by FlashLFQ, IonQuant, a...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2025-10-06 | PXD057758 | Pride
Mbr E. coli Human Lfq Quantification Pip 
ProteomicsStradard protein and yeast top-down data
We developed a novel dissociation strategy in the data acquisition process, the Mesh strategy to dissociate multiple charge states of one proteoform with stepped HCD (high collision energy dissociation). We proved that the ‘Mesh’ strategy could generate fragments with improved sequence coverage and...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-06-09 | PXD022941 | Pride
Stepped hcd Instrument control Real-time Mesh Top-down 
MetabolomicsSimultaneously discovering the fate and biochemical effects of pharmaceuticals through untargeted metabolomics
Untargeted metabolomics is an established approach in toxicology for characterising endogenous metabolic responses to xenobiotic exposure. Detecting the xenobiotic and its biotransformation products as part of the metabolomics analysis provides an opportunity to simultaneously gain deep insights int...
2023-07-03 | MTBLS2746 | MetaboLights
UnknownAssessment of Patient-Derived Xenograft Growth and Antitumor Activity: The NCI PDXNet Consensus Recommendations.
Not available
S-EPMC11217730 | biostudies-literature
Sort   by:  
 Page size