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ProteomicsPandanus amaryllifolius drought stress and recovery LC-MSMS TMT-Labelled
The aim of this project is to determine the protein changes of P. amaryllifolius in response to drought stress and during recovery. The protein changes between drought-stressed, well-watered, and recovered plants were evaluated using tandem mass tags (TMT)-based quantitative proteomics. The proteins...
ORGANISM(S): Pandanus amaryllifolius 
2022-02-16 | PXD028784 | Pride
Lc-msms Drought stress Abiotic stress Pandanus amaryllifolius Tmt-labelled Recovery 
ProteomicsAbsolute Quantification of Yeast Proteins Using Synthetic Peptide Standards and TMT labeling
The absolute protein amounts for the selected yeast ribosomal proteins (RPs) were determined using the standard peptides and TMT labelling. The range of the standard tryptic peptides were selected and synthesized based on the preliminary data-dependent experiments. The synthetic peptides were mixed ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-03-13 | PXD015025 | Pride
Tmt Yeast Tandem mass tag Standard peptides Saccharomyces cerevisiae Absolute quantification Synthetic peptides Orbitrap fusion 
ProteomicsK - TMT-6 plex labelled plasma ratio's 1:1:3:3:9:9
TMT-6 plex labelled plasma ratio's 1:1:3:3:9:9
ORGANISM(S): Homo sapiens (Human) 
2010-05-26 | PRD000247 | Pride
ProteomicsOptimising HCD fragmentation energy for TMT-labelled intact glycopeptide samples
It was crucial to choose the appropriate dissociation method and collision energy for large-scale glycoproteomics studies. HCD has been successfully applied to large-scale glycoproteomics experiments31. We know that TMT-labelled glycopeptides require higher collision energies for identification and ...
ORGANISM(S): Mus Musculus 
2025-01-20 | PXD060000 |
ProteomicsThe salivary proteome in relation to oral mucositis in autologous hematopoietic stem cell transplantation recipients: a labelled and label-free proteomics approach-TMTdata
Decreased salivary flow rates and/or changes in protein composition reported after autologous hematopoietic stem cell transplantation (ASCT) reduces the protective function of saliva. This might be associated with the development of oral mucositis (OM), an inflammation of the oral mucosa as a result...
ORGANISM(S): human oral bacteria ensemble Homo sapiens (Human) 
2023-07-10 | PXD033603 | Pride
Lc-ms Tmt-labelled proteomics Tmt-ms Label-free quantification Saliva Oral mucositis Autologous hematopoietic stem cell transplantation Multiple myeloma Dia-ms 
ProteomicsThe salivary proteome in relation to oral mucositis in autologous hematopoietic stem cell transplantation recipients: a labelled and label-free proteomics approach-DDALFQ
Decreased salivary flow rates and/or changes in protein composition reported after autologous hematopoietic stem cell transplantation (ASCT) reduces the protective function of saliva. This might be associated with the development of oral mucositis (OM), an inflammation of the oral mucosa as a result...
ORGANISM(S): human oral bacteria ensemble Homo sapiens (Human) 
2023-07-10 | PXD033591 | Pride
Lc-ms Tmt-labelled proteomics Tmt-ms Label-free quantification Saliva Oral mucositis Autologous hematopoietic stem cell transplantation Multiple myeloma Dia-ms 
ProteomicsMultiplexed Proteome Profiling of Carbon Source Perturbations in Two Yeast Species with SL-SP3-TMT
Saccharomyces cerevisiae and Schizosaccharomyces pombe are the most commonly studied yeast model systems, yet comparisons of global proteome remodeling between these yeast species are scarce. Here, we profile the proteomes of S. cerevisiae and S. pombe cultured with either glucose or pyruvate as the...
ORGANISM(S): Homo sapiens (Human) 
2021-05-11 | PXD014546 | Pride
Sps-ms3 Cerevisiae Pombe Tmt Isobaric Pyruvate 
ProteomicsAntimycin A-treated vs ETFDH-ko myoblasts TMT
The electron transfer flavoprotein dehydrogenase (ETFDH) is the bottleneck enzyme of fatty acid oxidation (FAO). We performed a TMT 6plex analysis on Antimycin A treated and ETFDH-ko myoblasts (compared to CRL).
ORGANISM(S): Mus musculus (Mouse) 
2023-10-24 | PXD045588 | Pride
Myoblast Tmt Etfdh Antimycin a 
UnknownEvaluation of phosphopeptide enrichment strategies for quantitative TMT analysis of complex network dynamics in cancer-associated cell signalling.
Not available
S-EPMC4398868 | biostudies-literature
ProteomicsRemoval of NHS-labelling by-products in proteomic samples
N-Hydroxysuccinimide chemistry is used extensively across proteomics sample preparation. One of the most popular applications is its use in isobaric reagent based quantitation; specifically both the iTRAQ and TMT approaches which rely on complete labelling of primary amines. However, serines, tyrosi...
ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human) 
2025-03-14 | PXD056723 | Pride
Phospho-peptides Tmt N-hydroxy succinimide Methylamine Nhs-ester Hydroxylamine 
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