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ProteomicsThe Arabidopsis tyrosine phosphatase RLPH2 targets D-group MAP kinases
Knowing that biochemically RLPH2 is a tyrosine phosphatase, we selectively In an attempt to discover RLPH2 substrates we decided to use the power of phospho-proteomics. Immunoprecipitated tyrosine phosphorylated peptides from enriched phospho-peptide pools derived from these plant extracts. Mass spe...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2026-01-26 | PXD038689 | Pride
Phosphoproteomics Arabidopsis Protein phosphatase Mapk 
ProteomicsB4 Raf-like MAPKKK RAF24 regulates Arabidopsis thaliana flowering time
The timing of flowering is a critical agronomic trait governed by a number of different internal and external events, such as temperature, light and photoperiod. Despite a firm understanding of flowering time from a genetic standpoint, there exists a limited understanding of how post-translational m...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-05-09 | PXD038688 | Pride
Phosphoproteomics Tandem-affinity purification Protein kinases Dia Arabidopsis Fllowering 
ProteomicsCatalytically inactive subgroup VIII receptor-like cytoplasmic kinases regulate the immune-triggered oxidative burst in Arabidopsis thaliana
Protein kinases are key components of multiple cell signaling pathways. Several protein kinases of the receptor-like cytoplasmic kinase (RLCK) family have demonstrated roles in immune and developmental signaling across various plant species, making them a family of interest in the study of phosphory...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-05-07 | PXD052679 | Pride
Arabidopsis thaliana Protein kinase 
ProteomicsProteomics analysis integrated with transcriptomics of clubroot resistant and susceptible Brassica napus near-isogenic lines in response to Plasmodiophora brassicae infection
Clubroot disease, caused by Plasmodiophora brassicae, poses a significant global threat to Brassica crop production. Understanding the disease resistance mechanism is vital to assist in the continuous development of clubroot-resistant genetic material. In this study, we used clubroot-resistant (CR) ...
ORGANISM(S): Brassica napus (Rape) 
2025-10-06 | PXD060262 | Pride
Proteomics Brassica napus Clubroot 
ProteomicsSystems-level nutrient stress analysis of soil grown Brassica napus shoots and roots by quantitative proteomics
Appropriate soil nutrient management is critical for modern Canola (Brassica napus L.) varieties and hybrids to meet their yield potentials. Canola fields are typically supplemented by the application of nitrogen, phosphorus, sulphur, and to a lesser extent, potassium fertilizers to maximize yield, ...
ORGANISM(S): Brassica napus (Rape) 
2025-05-06 | PXD032223 | Pride
Boxcardia Nutrient stress Roots Shoots Brassica napus Quantitative proteomics 
ProteomicsShort Gradient Multi-CV FAIMSpro BoxCar DIA Facilitates Quantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana - Abiotic Stress Dataset
A major limitation in quantitative time-course proteomics is the tradeoff between depth-of-analysis and speed-of-analysis. In high complexity, high dynamic samples such as plant extracts, this is tradeoff is especially apparent. To address this, we evaluate multiple composition voltage (CV) High Fie...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD039004 | Pride
Boxcardia Faimspro Arabidopsis thaliana Directdia 
ProteomicsA proteome-level investigation into Plasmodiophora brassicae resistance in Brassica napus canola
Clubroot of Brassicaceae, an economically important soil borne disease, is caused by Plasmodiophora brassicae Woronin, an obligate, biotrophic protist. This disease poses a serious threat to canola and related crops in Canada and around the globe causing significant loss to seed yield. The pathogen ...
ORGANISM(S): Brassica napus (Rape) 
2022-03-22 | PXD031070 | Pride
Boxcar dia proteomics Brassica napus Clubroot Plant-pathogen interaction Calcium binding 
ProteomicsOuter membrane vesicles and associated proteins from the methanotrophic bacterium, Methylomicrobium album BG8
Outer Membrane Vesicles (OMVs) are spherical bodies derived from the outer membrane of Gram-negative bacteria. Fully encapsulated by membrane, these extracellular structures transport cargo, often proteins, from within the bacterium into the external environment. Although there are multiple studies ...
ORGANISM(S): Methylomicrobium album BG8 
2026-05-25 | PXD050176 | Pride
Methanotrophs Lc-ms 
ProteomicsUncovering the positive role of strigolactone perception in barley drought response I
Drought is a destructive abiotic stress, with plants possessing diverse strategies to survive periods of limited water resources. Previous results have described connections between strigolactone (SL) and drought, however, here we used the barley (Hordeum vulgare) SL-insensitive mutant hvd14 (dwarf1...
ORGANISM(S): Hordeum vulgare (Barley) 
2023-08-31 | PXD040828 | Pride
Phytohormone Transcriptome Barley Strigolactone Abscisic acid Proteome Drought 
ProteomicsPhosphate refeeding in Arabidopsis thaliana seedlings exerts differential impacts on the shoot and root proteome.
Phosphorus (P) is an essential plant macronutrient required for fundamental biochemical, metabolic, and physiological processes. In its inorganic and chemically available form of orthophosphate (H2PO4-; Pi), plant root epidermal cells are able to directly assimilate this mineral from the soil via pl...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2026-02-09 | PXD062427 | Pride
Arabidopsis thaliana Shoots & roots Phosphate starvation Proteomics 
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