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ProteomicsPCT-SWATH kidney tissues - Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
DDA and SWATH analysis of human kidney tissues. Data set used for PCT-SWATH paper. PCT-SWATH provides the first method to generate a digital map representing the proteome of biopsy level clinical samples from which thousands of proteins can be accurately quantified with a high degree of reproducibi...
ORGANISM(S): Homo sapiens (Human) 
2015-02-04 | PXD000672 | Pride
Pct-swath  kidney tissues 
ProteomicsPCP39: prostate cancer proteome for 39 patients by PCT-SWATH
here we processed 105 biopsy-level tissues from 39 prostate cancer patients using pressure cycling technology (PCT) and SWATH-MS
ORGANISM(S): Homo sapiens (Human) 
2018-10-17 | PXD004589 | Pride
Prostate cancer  pct  swath 
Proteomics76 human liver tissue proteomes by PCT-SWATH
Rapid proteotyping of 38 human liver tissues in duplicate using pressure-cycling technology (PCT) and SWATH mass spectrometry
ORGANISM(S): Homo sapiens (Human) 
2018-10-31 | PXD004873 | Pride
Hepatocellular carcinoma  liver  pct-swath 
ProteomicsNCI60 proteome by PCT-SWATH - Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines
We obtained quantitative analysis of the NCI-60 cell panels using pressure cycling technology (PCT) and SWATH-MS. Each cell was analyzed in duplicate. The data were analyzed using a cell line SWATH assay library and OpenSWATH, followed by SWATH-expert refinement.
ORGANISM(S): Homo sapiens (Human) 
2020-06-01 | PXD003539 | Pride
Nci-60 cell  pct  swath  breast cancer  luekemia  colon cancer  melanoma  ovarian cancer  brain tumor  renal cancer  lung cancer  prostate cancer  drug sensitivity 
Proteomics113 DLBCL SWATH maps by PCT-SWATH
Rapid proteotyping of 41 FFPE DLBCL tumor tissues with 2-3 biological replicates using pressure-cycling technology (PCT) and SWATH mass spectrometry.
ORGANISM(S): Homo sapiens (Human) 
2019-10-07 | PXD014943 | Pride
Pct-dia Swath Ffpe Dlbcl 
Proteomicsproteotypes of 76 breast cancer cell lines by PCT-SWATH
Here we obtained the proteotypes of 76 breast cancer cell lines using pressure cycling technology (PCT) and SWATH mass spectrometry.
ORGANISM(S): Homo sapiens (Human) 
2021-01-13 | PXD004701 | Pride
Breast cancer  pressure cycling technology  swath-ms 
ProteomicsProteomic profiling of NCI60 cell lines from Cancer Cell Line Encyclopedia
This ArrayExpress record contains meta-data and results of quantitative analysis of cell lines from the NCI-60 panel using pressure cycling technology (PCT) and SWATH-mass spectrometry. Each cell line was analyzed in duplicate. Raw data files are available at the EMBL-EBI protemics data archive (PRI...
ORGANISM(S): Homo sapiens 
2017-01-27 | E-PROT-2 | biostudies-arrayexpress
UnknownProteomics-based investigation of cerebrovascular molecular mechanisms in cerebral amyloid angiopathy by the FFPE-LMD-PCT-SWATH method.
Not available
S-EPMC9250250 | biostudies-literature
ProteomicsComparison of FFPE and fresh frozen prostate tissues using PCT SWATH
We compared the proteomes of FFPE and fresh frozen tissues (both tumorous and non-tumorous) from 16 prostate cancer patients using pressure cycling technology and SWATH-MS.
ORGANISM(S): Homo sapiens (Human) 
2019-10-07 | PXD004691 | Pride
Prostate cancer  pct-swath  ffpe 
ProteomicsABLE-SWATH - A Case Study and Methodology for OpenSWATH Parameter Optimization Using the ProCan90 Data Set and 45,810 Computational Analysis Runs
Proteomic methods typically involve lengthy, multi-step sample preparation protocols (14-16 hrs), especially for the lysis and digestion of solid tissue samples or cells. We developed a streamlined proteomic sample preparation protocol termed Accelerated Barocycler Lysis and Extraction (ABLE), that...
ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat) 
2019-01-21 | PXD010688 | Pride
Urea Sample preparation Clinical proteomics Swath Barocycler Sdc Pct 
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