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ProteomicsThe SETD3 interacting protein was identified and screened by TurboID method, and Search for potential histidine methylation modification sites
we employed a TurboID approach that utilized a modified promiscuous biotin ligase BirA for proximity labeling by fusing SETD3 with this enzyme, By introducing biotin, cellular fractions of SETD3-TurboID-transfected cells, both cytosolic and chromatin fractions, underwent immunoprecipitation, followe...
ORGANISM(S): Homo sapiens (Human) 
2024-03-12 | PXD046472 | Pride
Turboid Hela s3 Lc-ms/ms 
ProteomicsThe SETD3 interacting protein was identified and screened by TurboID method, and Search for potential histidine methylation modification sites
we employed a TurboID approach that utilized a modified promiscuous biotin ligase BirA for proximity labeling by fusing SETD3 with this enzyme, By introducing biotin, cellular fractions of SETD3-TurboID-transfected cells, both cytosolic and chromatin fractions, underwent immunoprecipitation, followe...
ORGANISM(S): Homo sapiens (Human) 
2024-04-16 | PXD050556 | Pride
Setd3 Methylation Hela s3 
ProteomicsMouse NIH-3T3 cohesin TurboID LC-MSMS
The cohesin complex is a plieotropic regulator of genome structure and function. It is known to play a role in sister chromatin cohesin, DNA replication, DNA repair, and regulation of gene expression. Cohesin has several known interacting proteins that aid in the various roles within a nucleus, yet ...
ORGANISM(S): Mus musculus (Mouse) 
2025-06-02 | PXD060289 | Pride
Lc-msms Nih-3t3 Turboid Cohesin 
ProteomicsIdentification of DELLA proximitome by TurboID labeling
DELLA proteins act as transcription regulators that repress gibberellin (GA) responses and are best known for controlling the semi-dwarf crop varieties that drove the Green Revolution. DELLAs regulate gene expression primarily through protein–protein interactions with transcription factors and chrom...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2026-07-28 | PXD078134 | Pride
Della proximitome Turboid Della proteins Proximity labeling Lc-ms/ms 
UnknownUnraveling the cohesin-chromatin interface: identifying protein interactions that modulate chromosome structure and function.
Not available
S-EPMC12128382 | biostudies-literature
ProteomicsMapping Architecture of Protein complexes in Arabidopsis using XL-MS (Histone H2B turboID)
Capturing molecular machines in action is key to understanding protein complex architecture, cellular regulation, and gene function. Here, we present a cross-linking mass spectrometry (XL-MS) platform using the PhoX cross-linker to map proteome-wide interactions in Arabidopsis thaliana. By analyzing...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2026-07-29 | PXD078284 | Pride
Cross-linking mass spectrometry (xl-ms) Interlink Arabidopsis. Ribosome interactome Histone interactome Protein-protein interaction (ppi) network Cross-links Intralink Photosystem interactome 
UnknownProximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5.
Not available
S-EPMC9938590 | biostudies-literature
ProteomicsValidation of α-satellite-associated regulators using the dCas9-TurboID system in HeLa cells
To validate whether the dCas9-TurboID system is applicable for proximity labeling at specific genomic regions, label-free mass spectrometry was employed to validate the satellite relative proteins that were enriched in the group of stable Hela cell line expressing sgAS.
ORGANISM(S): Homo Sapiens 
2025-03-05 | PXD061518 |
ProteomicsTurboID-based proxisome mapping of the human glucocorticoid receptor in A549 cells
Exogenous glucocorticoids are frequently used to treat inflammatory disorders and as adjuncts in solid cancers. However, their use is associated with severe side effects and therapy resistance. Novel glucocorticoid receptor (GR) ligands with a patient-validated reduced side effect profile have not y...
ORGANISM(S): Homo sapiens (Human) 
2024-05-24 | PXD042014 | Pride
Lc-msms Turboid Glucocorticoid receptor Interactomics 
ProteomicsIdentification of the RNF12/RLIM proximal proteome
RNF12/RLIM is an E3 ubiquitin ligase that plays key developmental roles and is genetically disrupted in the neurodevelopmental disorder Tonne-Kalscheuer syndrome. RNF12/RLIM regulates X-chromosome inactivation and controls the expression of neural and gametogenesis related genes. To better understan...
ORGANISM(S): Mus musculus (Mouse) 
2024-01-09 | PXD046733 | Pride
E3 ubiquitin ligase  rnf12/rlim  embryonic stem cells  protein ubiquitylation  turboid chromatin  transcription 
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