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ProteomicsRNA pull down experiment for vA-202 (ANAPC1P2) lncRNA
This study aimed to identify protein interaction partners of the lncRNA vA-202 using an RNA pull-down approach followed by mass spectrometry. Biotinylated vA-202 RNA was generated by in vitro transcription incorporating biotin-14-CTP. For each pull-down reaction, 400 µg of whole-cell lysate (in a to...
ORGANISM(S): Homo sapiens (Human) 
2026-05-25 | PXD070150 | Pride
Human Rna pull down Orbutrap ms 
ProteomicsHaCaT ACSL4mRNA probe pull-down MS
ACSL4mRNA probe was designed for pull-down experiments in HaCaT lysates
ORGANISM(S): Homo sapiens (Human) 
2025-10-13 | PXD052755 | Pride
Hacat acsl4mrna pull-down ms 
ProteomicseEF1A peptide pull-down LC-MS/MS
Peptide pull-down using synthetic peptides corresponding to unmodified and methylated human eEF1A.
ORGANISM(S): Homo sapiens (Human) 
2018-07-04 | PXD008115 | Pride
Methylation Ptm Lc-ms/ms 
ProteomicsHistone peptide pull-down H3K4me0-3 +/- H3Q5ser
The interactome to H3 peptides in different H3K4 methylation states and its change upon H3Q5 serotonylation was determined by performing peptide pull-down followed by qMS. Streptaviding beads, saturated with biotinylated H3 peptides in all possible H3K4 methylation states and with presence and absen...
ORGANISM(S): Homo sapiens (Human) 
2025-06-10 | PXD062109 | Pride
Hela H3 H3q5 
ProteomicsPeptidomics-guided identification of TRPV1-targeting peptides from Apis mellifera venom and macrophage proteomics
Bee venom has been traditionally used in the treatment of inflammatory disorders and is known to contain diverse bioactive peptide components. In this study, we systematically characterized the Apis mellifera venom peptidome and investigated peptides enriched under TRPV1 pull-down conditions with po...
ORGANISM(S): Mus musculus (Mouse) Apis mellifera (Honeybee) 
2026-04-17 | PXD075103 | Pride
Peptidomics Proteomics Macrophage Inflammation Apis mellifera venom Pull-down Trpv1 
ProteomicsAutoantigen screening using pull-down and LC-MS
Autoantibodies from a mice model were utilized to pull-down a range of antigens, which were identified by nanoLC-MS.
ORGANISM(S): Mus musculus (Mouse) 
2023-09-29 | PXD044323 | Pride
Antibody Lc-ms Antigen Pull-down 
GenomicsPEPseq Quantifies Transcriptome-Wide Changes in Protein Occupancy and Reveals Selective Translational Repression After Translational Stress
PEPseq - Peptide Enhanced Pull-Down for RNA Sequencing
PRJEB58258 | ENA
ProteomicsExamining the stability of nucleosomal modifications during pull-down affinity purification
Here we investigated the stability of nucleosomal modifications during pull-down affinity purification with HeLa nuclear extracts. Unmodified di-nucleosomes and di-nucleosomes decorated with H3K4me3K9acK14acK18acK23acK27ac, H4K5acK8acK12acK16acK20me2 and incorporating histone variant H2A.Z were incu...
ORGANISM(S): Homo sapiens (Human) 
2023-12-10 | PXD042823 | Pride
Nucleosome pull-down 
ProteomicsMouse hippocampus RNA pull down LC-MS/MS
Antisense and sense probes of noncoding RNA GAS5 were used to perform the RNA pull down experiment on mouse hippocampus tissues. Then the proteins were identified by LC-MS/MS.
ORGANISM(S): Mus musculus (Mouse) 
2021-09-09 | PXD023363 | Pride
Mouse hippocampus Rna pull down Lc-ms/ms 
ProteomicsProteomic identification of primate-specific lncRNA LINC01021 interactors via RNA pull-down MS
Long non-coding RNAs (lncRNAs) play critical regulatory roles in primate-specific biological processes, yet many primate-specific lncRNAs and their protein interactors remain poorly characterized. In this study, we focused on primate-specific lncRNAs as potential drivers of protein interactions. Usi...
ORGANISM(S): Homo sapiens (Human) 
2026-06-29 | PXD075354 | Pride
Long non-coding rna Proteomics Lncrna Mass spectrometry Protein-rna interaction Linc01021 Primate-specific lncrna Rna-binding protein Interactome Rbms Rna pull-down 
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