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ProteomicsFeasibility of phosphoproteomics to uncover oncogenic signalling in secreted extracellular vesicles using glioblastoma-EGFRVIII cells as a model
Cancer cells secrete extracellular vesicles (EVs) that contain molecular information, including proteins and RNA. Oncogenic signalling can be transferred via the cargo of EVs to recipient cells and may influence the behaviour of neighbouring cells or cells at a distance. This cargo may contain cance...
ORGANISM(S): Homo sapiens (Human) 
2023-10-17 | PXD046189 | Pride
Exosome Phospho-proteomics Glioblastoma multiforme Egfr Inka Lc-ms/ms Extracellular vesicles 
ProteomicsHuman AML secretome and correlation with Anti-Apoptotic Index, part 1
Expression of proteins regulating apoptosis (BCL-2, MCL-1, BCL-X and BAX) in acute myeloid leukemia (AML) blasts at diagnosis have been shown to be associated with disease-free survival. We previously found that the initially high apoptosis-resistance of AML cells decreased after therapy, while rega...
ORGANISM(S): Homo sapiens (Human) 
2016-02-03 | PXD001476 | Pride
Human Secretome Aml 
ProteomicsHS_CSF_microvesicles
Proteomics of cerebrospinal fluid microvesicles
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe005110 | PeptideAtlas
ProteomicsDPHL v2: An updated and comprehensive DIA pan-human assay library for quantifying more than 14,000 proteins
we generated DPHL v2 from 1608 DDA-MS data acquired using Orbitrap mass spectrometers. The data included 586 DDA-MS newly acquired from 17 tissue types, while 1022 files were derived from DPHL v1. DPHL v2 thus comprises data from 24 sample types, including several cancer types . We generated four va...
ORGANISM(S): Homo Sapiens 
2023-01-18 | PXD039313 |
ProteomicsSecretome Processing for Proteomics: A Methods Comparison
The cancer cell secretome comprises a treasure-trove for biomarkers since it reflects cross-talk between tumor cells and their surrounding environment. In this study, we evaluated six secretome sample processing workflows coupled to single-shot mass spectrometry: 1. Protein concentration by ultrafil...
ORGANISM(S): Homo sapiens (Human) 
2024-02-12 | PXD043014 | Pride
Proteomics  in-solution digestion  single-shot  secretome  biomarker 
ProteomicsIGF1R signaling primes epithelial cancer cells to induce epithelial-mesenchymal plasticity by upregulating integrin αV in cutaneous squamous cell carcinoma
Asses the global (phospho) protein profile of cancer cell lysates of three cell biological replicates of each stage of our model of skin SCC progression (full epithelial, plastic EpCAM-positive, plastic EpCAM-negative, and full mesenchymal) isolated from mouse skin SCCs by FACS sorting. The main re...
ORGANISM(S): Mus musculus (Mouse) 
2024-08-10 | PXD048323 | Pride
Cscc Cancer cell plasticity Itgav Tumor relapse Emp Prognostic biomarker Igf1r 
Proteomicsabdominal aortic aneurysm (AAA) proteomics
An abdominal aortic aneurysm (AAA) is a pathological dilatation of the aortic wall and it is a life-threatening disease due to the risk of rupture. Currently, surgical intervention remains the only definitive treatment recommended for large or rapidly expanding aneurysms. No pharmacological therapy ...
ORGANISM(S): Homo sapiens (Human) 
2025-09-29 | PXD067859 | Pride
Dia-ms Human tissue Abdominal aortic aneurysm 
UnknownPhospholipase A2 from krait Bungarus fasciatus venom induces human cancer cell death in vitro.
Not available
S-EPMC6896944 | biostudies-literature
ProteomicsMTB_normal_cultureFiltrateSamples
Triplicate culture filtrate samples of normal (log phase) and PBS cultured (starvation) M. tuberculosis were separated by SDS-PAGE, and 10 bands were excised from each lane after staining with Coomassie R-250. In-gel trypsin digestion was performed on gel bands followed by nanoLC. Eluting peptides w...
ORGANISM(S): Mycobacterium Tuberculosis 
2013-12-31 | PAe003971 | PeptideAtlas
ProteomicsMTB_starved_cultureFiltrateSamples
Triplicate culture filtrate samples of normal (log phase) and PBS cultured (starvation) M. tuberculosis were separated by SDS-PAGE, and 10 bands were excised from each lane after staining with Coomassie R-250. In-gel trypsin digestion was performed on gel bands followed by nanoLC. Eluting peptides w...
ORGANISM(S): Mycobacterium Tuberculosis 
2013-12-31 | PAe003970 | PeptideAtlas
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