Pierce Andrew A

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Proteomics (62)
Transcriptomics (9)
Unknown (6)
Genomics (5)
Metabolomics (3)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (61)
Andropogon gerardi (61)
Bacteria (61)
Canis lupus familiaris (61)
Cnidaria (61)
Ectopseudomonas oleovorans CECT 5344 (61)
Ensifer adhaerens (61)
Enterococcus faecalis (61)
Globicatella sanguinis (61)
Halictus scabiosae (61)
Histomonas meleagridis (61)
Human immunodeficiency virus 1 (61)
Mesocricetus auratus (61)
Methylohalobius crimeensis 10Ki (61)
Miscanthus x giganteus (61)
Mus musculus (61)
Panicum virgatum (61)
Pseudomonas aeruginosa SJTD-1 (61)
Rabies virus Nishigahara RCEH (61)
Rattus norvegicus (61)
Rattus rattus (61)
Rhodococcus jostii RHA1 (61)
Rhodopseudomonas palustris (61)
Schizosaccharomyces pombe 927 (61)
Sorghastrum nutans (61)
Homo sapiens (6)
Clostridium botulinum (2)
Mus musculus (2)
human nasopharyngeal metagenome (1)
Prochlorococcus marinus (1)

Repository

pride (61)
biostudies-arrayexpress (10)
EGA (4)
MetaboLights (3)
PeptideAtlas (1)

Tissue

Cell culture (14)
Blood (10)
Blood cell (5)
Brain (4)
Epithelial cell (4)
Heart (4)
Leukemia cell (3)
B cell (2)
Early embryonic cell (2)
Egg (2)
Erythrocyte (2)
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HEK-293T cell (2)
Blood platelet (1)
Blood serum (1)
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Embryonic stem cell (1)
Fetal cardiomyocyte (1)
HEK-293 cell (1)
Lung (1)
Lymph node (1)
Mesenteric artery (1)
Midbrain (1)
Neuron cellular homeostasis (1)
Oocyte (1)
Ovary cancer cell (1)
Permanent cell line cell (1)
Renal artery (1)
Saccharomyces cerevisiae metabolite (1)
T cell (1)

Disease

Chronic myeloid leukemia (4)
Leukemia (3)
Acute leukemia (2)
Breast cancer (2)
Non-small cell lung carcinoma (2)
Amyotrophic lateral sclerosis (1)
Dilated cardiomyopathy (1)
Diphtheria (1)
Disease free (1)
Frontotemporal dementia (1)
Hypertension (1)
Hypertrophic cardiomyopathy (1)
Malignant neoplasm of ovary (1)
Mulibrey nanism (1)
Plasmodium falciparum malaria (1)
Rhabdoid cancer (1)

Technology Type

Mass Spectrometry (61)
Shotgun proteomics (31)
Affinity purification coupled with mass spectrometry proteomics (15)
Bottom-up proteomics (8)
Data-dependent acquisition (7)
Gel-based experiment (4)
Mass spectrometry (3)
SWATH MS (3)
Data-independent acquisition (2)
HDMSE (2)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2500 (1)
SRM/MRM (1)

Instrument Platform

QExactive (Thermo Scientific) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
LCQ DECA (1)

Publication Date

2025 (8)
2026 (8)
2024 (8)
2019 (7)
2023 (7)
2022 (7)
2016 (7)
2021 (5)
2018 (3)
2020 (3)
2014 (2)
2010 (2)
2008 (2)
2007 (2)
2012 (1)
2002 (1)
2017 (1)
2015 (1)

UNIPROT ID/AC

Q12337 (1)
R0020C (1)

CHEBI ID

CHEBI:28087 (2)
CHEBI:42111 (2)
CHEBI:17768 (2)
CHEBI:15721 (2)
CHEBI:15414 (2)
CHEBI:16856 (2)
CHEBI:48928 (2)
CHEBI:52742 (2)
CHEBI:27931 (2)
CHEBI:15729 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:16467 (2)
CHEBI:17203 (2)
CHEBI:18050 (2)
CHEBI:15971 (2)
CHEBI:16857 (2)
CHEBI:16015 (2)
CHEBI:15351 (2)
CHEBI:16474 (2)
CHEBI:16347 (2)
CHEBI:17490 (2)
CHEBI:17295 (2)
CHEBI:16828 (2)
CHEBI:139329 (1)
CHEBI:139327 (1)
CHEBI:139389 (1)
CHEBI:16902 (1)
CHEBI:6173 (1)
CHEBI:139378 (1)

Metabolite Name

Glutathione (2)
L-Proline (2)
L-Arginine (2)
L-Ornithine (2)
L-Threonine (2)
L-Histidine (2)
S-Adenosyl-L-methionine (2)
L-Tryptophan (2)
L-Glutamine (2)
L-Glutamate (2)
L-Phenylalanine (2)
Trans-Hexadec-2-enoylcarnitine (1)
P-aminobenzoate-beta-D-glucopyranosyl ester (1)
Ne,Ne-dimethyllysine (1)
N-(3-oxooctanoyl)-L-homoserine (1)
Methyl5-(but-3-en-1-yl)amino-1,3,4-oxadiazole-2-carboxylate (1)
L-thiazolidine-4-carboxylate (1)
Elaidiccarnitine (1)
Deacetylcolchicine (1)
4-oxo-4-(3-pyridyl)-butanoate (1)
Epsilon-guanidinocaproate (1)
N-(octanoyl)-L-homoserine (1)
Di-n-Undecylamine (1)
L-proline amide (1)
N-Acetyl-beta-D-glucosaminylamine (1)
N-Carbamyl-L-glutamate (1)
LL-2,6-Diaminoheptanedioate (1)
Adenosine 2',5'-bisphosphate (1)
O-Butanoylcarnitine (1)
3-(Dimethylamino)propyl benzoate (1)

Study type

Transcription profiling by array (5)
Comparative genomic hybridization by array (2)
Unknown experiment type (1)
Other (1)
ChIP-seq (1)

Release Date

2025 (3)
2014 (2)
2010 (2)
2008 (2)
2007 (2)
2019 (1)
2012 (1)
2023 (1)
2022 (1)
2021 (1)

Lab affiliation

Vice Dean, Faculty of Medical and Human Sciences Section Lead, Infrastructure and Technology, Manchester Academic Health Science Centre University of Manchester Wolfson Molecular Imaging Centre Manchester M20 3LJ (4)
Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, Texas 75390, USA (2)
Director of the Robert H. Lurie Comprehensive Cancer Center of Northwestern University and the Jesse, Sara, Andrew, Abigail, Benjamin and Elizabeth Lurie Professor of Oncology in the Departments of Medicine and Biochemistry and Molecular Genetics. (2)
1. Department of Pharmacology & Therapeutics, McGill University, Montréal, Québec, Canada 2. Centre de Recherche en Biologie Structurale, Montréal, Québec, Canada (1)
Advanced Technology Walter & ELiza Hall Institute (1)
Andrew W. Mellon Director, Scientific Research, Conservation and Science, The Art Institute of Chicago (1)
Center for Network Systems Biology, Boston University School of Medicine, Boston, MA, United States. (1)
Center for Network Systems Biology, Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA (1)
Centre for Translational Pharmacology, Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK (1)
Dana Farber Cancer Institute (1)
Department of Anatomy and Neurobiology Virginia Commonwealth University Richmond, VA 23298-0709 USA (1)
Department of Anatomy and Neurobiology, School of Medicine, Virginia Commonwealth University, Richmond, VA USA (1)
Department of Applied Chemistry, Institute of Natural Science, Kyung Hee University, Yongin 17104, Republic of Korea (1)
Department of Biochemistry, University of Texas Southwestern Medical Center (1)
Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, USA. (1)
Department of Biological SciencesUniversity of North Carolina CharlotteCharlotteUSA (1)
Department of Biomedical Sciences, Panum Institute, University of Copenhagen, Blegdamsvej 3, 2200 Copenhagen N, Denmark. (1)
Department of Biotechnology, Jožef Stefan Institute, Ljubljana, Slovenia (1)
Department of Chemistry and Biochemistry, Loo, University of California-Los Angeles, United States of America (1)
Department of Chemstry & Department of Biochemistry and Molecular Biology, University of Clagary, Canada (1)
Department of Experimental Pharmacology and 35 Toxicology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany, 36 Martinistrasse 52, 20246 Hamburg, Germany (1)
Department of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, Kansas, USA (1)
Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Department of Pathology, University of California, San Francisco, USA (1)
Director, Robert H. Lurie Comprehensive Cancer Center Jesse, Sara, Andrew, Abigail, Benjamin and Elizabeth Lurie Professor of Oncology Professor of Medicine (Hematology and Oncology) and Biochemistry and Molecular Genetics (1)
Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto ON M5S 3E1, Canada (1)
Emory Univerity (1)
Faculty of medical and human sciences, institute cancer studies (1)
Institute of Cancer Research (1)

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THOC5 controls 3M-BM-4end-processing of immediate early genes via interaction with CPSF100

Transcription of immediate early genes (IEGs) in response to extrinsic and intrinsic signals is tightly regulated at multiple stages. THOC5, a member of the TREX (transcription/export) complex plays a role in expression of only a subset of constitutively active genes. In this report, we show that TH...

ORGANISM(S): Mus musculus

2014-11-03 | E-GEOD-59561 | biostudies-arrayexpress

Physician Assistant Students' Perception of Online Didactic Education: A Cross-Sectional Study.

Not available

S-EPMC9931029 | biostudies-literature

Untargeted metabolomics to understand the basis of phenotypic differences in amphotericin B-resistant Leishmania parasites

BACKGROUND: Protozoan Leishmania parasites are responsible for a range of clinical infections that represent a substantial challenge for global health. Amphotericin B (AmB) is increasingly used to treat Leishmania infection, so understanding the potential for resistance to this d...

2019-09-26 | MTBLS1167 | MetaboLights

A proteomics-based method for identifying antigens within immune complexes

A novel approach to recover and identify immune complexes (ICs) was developed using size exclusion chromatography (SEC) and affinity chromatography on immunoglobulin binding columns (HiTrap Protein G). The purification process was monitored by 1D SDS-PAGE, protein staining, Western blotting and, fin...

ORGANISM(S): Betainfluenzavirus Homo sapiens (Human) Alphainfluenzavirus

2021-01-04 | PXD021575 | Pride

Chronic inorganic nitrate supplementation does not improve metabolic health and worsens disease progression in mice with diet-induced obesity.

Inorganic nitrate (NO3-) has been proposed to be of therapeutic use as a dietary supplement in obesity and related conditions including the Metabolic Syndrome (MetS), type-II diabetes and metabolic dysfunction associated steatotic liver disease (MASLD). Administration of NO3- to endothelial nitric o...

2025-07-14 | MTBLS9526 | MetaboLights

SCOPE 4 proteomics - Dual targeting of p53 and c-MYC selectively eliminates leukaemic stem cells

BaF3 were transfected with Jak2 V617F, Jak2 K539L or Mpl W515L, shotgun proteomic analysis with iTRAQ was performed

ORGANISM(S): Mus musculus (Mouse)

2016-05-26 | PXD002782 | Pride

Baf3 cell line transfected with a variety oncogenic linked mutations

Sinus Microbiome Plays a Primary Role in Rhinosinusitis

Persistent mucosal inflammation and microbial infection are characteristic of Chronic Rhinosinusitis (CRS). Though mucosal microbiota dysbiosis is a characteristic feature of other chronic inflammatory diseases, the relationship between sinus microbiota composition and CRS is unknown. Here we demons...

ORGANISM(S): human nasopharyngeal metagenome

2012-07-31 | E-GEOD-37850 | biostudies-arrayexpress

Human cell lines pulldown interactions CL-MSMS

Using a combination of GFP-trap affinity purification, native gel band identification and APEX2-mediated BioID pulse-chase analysis, we investigate an import pathway and folding mechanism for histones H3 and H4. We investigated proteins associating with H3 and H4 bearing mutations along alpha-helix ...

ORGANISM(S): Homo sapiens (Human)

2022-09-15 | PXD029354 | Pride

Human Hek293-f Lc-msms Hela frt Warwick_rtp Histone chaperone Bioid

Effect of Juvenile Environmental Tobacco Smoke Exposure on the Rat Frontal Cortex Neuroproteome

Exposure to secondhand tobacco smoke during early childhood has been linked with an increased risk for behavioral disorders, yet little is known regarding how brain development is impacted. Using an environmental tobacco smoke (ETS) passive inhalation model, this study assesses the neurodevelopmenta...

ORGANISM(S): Rattus norvegicus (Rat)

2018-12-17 | PXD011744 | Pride

Tobacco Juvenile Hdmse Neuroproteome Rat Brain Frontal Secondhand smoke Cortex Development