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ProteomicsPlasma Hirief - In-depth human plasma proteome analysis captures tissue proteins and transfer of protein variants across the placenta
Novel method for plasma proteomics and proteogenomics
ORGANISM(S): Homo sapiens (Human) 
2019-04-10 | PXD010899 | Pride
Plasma proteogenomics 
ProteomicsJUMPg: an Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells
Proteogenomics is an emerging approach to improve gene annotation and interpretation of proteomics data. Here we present JUMPg, an integrative proteogenomics pipeline including customized database construction, tag-based database search, peptide-spectrum match filtering, and data visualization. JUMP...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-16 | MSV000080641 | MassIVE
ProteomicsPlasma Hirief - In-depth human plasma proteome analysis captures tissue proteins and transfer of protein variants across the placenta
Novel method for plasma proteomics and proteogenomics
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-06-25 | MSV000098334 | MassIVE
UnknownSystems analysis of endothelial cell plasma membrane proteome of rat lung microvasculature.
Not available
S-EPMC3080792 | biostudies-literature
ProteomicsProteomic profiling of Biomphalaria glabrata plasma proteins
Proteomic profiling of Biomphalaria glabrata plasma proteins with binding affinity to those expressed by early developing larval Schistosoma mansoni
ORGANISM(S): Biomphalaria glabrata 
2017-01-05 | PXD004942 | Pride
Proteomics Biomphalaria glabrata  schistosoma mansoni  innate immunity  plasma proteins  lectins  sporocyst tegument  larval transformation proteins  affinity chromatography Proteogenomics  protein-protein interactions Lc-ms/ms 
ProteomicsProteogenomics insights of hemocytes and plasma from the freshwater zebra mussel Dreissena polymorpha
RNA-seq informed proteomics of Dreissena polymorpha for discovering immune proteins from the zebra mussel hemolymph.
ORGANISM(S): Dreissena polymorpha 
2019-04-25 | PXD012991 | Pride
Immune system Bivalve Animal Dreissena Proteogenomics Mussel Ecotoxicology 
ProteomicsFormation of a protein corona on the surface of extracellular vesicles in blood plasma
In this study we tested whether a protein corona is formed around extracellular vesicles (EVs) in biofluids. We isolated nascent EVs of THP1 cells and platelets, and incubated them in EV-depleted platelet-free plasma from healthy subjects and patients with rheumatoid arthritis. EVs were subjected to...
ORGANISM(S): Homo sapiens (Human) 
2022-02-15 | PXD020584 | Pride
Protein corona  extracellular vesicles  blood plasma  rheumatoid arthritis  mass spectrometry  aggregation 
ProteomicsIn-depth plasma proteomics of patients with suspected lung cancer (lung adenocarcinoma and non-cancer controls) with HiRIEF LC-MS/MS
Here, we present an in-depth proteomic profiling of pre-diagnostic plasma samples from 114 individuals with suspected lung cancer, including 57 patients diagnosed with stage III-IV lung adenocarcinoma (LUAD) and 57 non-cancer controls. Plasma samples were depleted of high-abundant proteins, and prot...
ORGANISM(S): Homo sapiens (Human) 
2025-11-11 | PXD061144 | Pride
ProteomicsIn-depth plasma proteomics in patients with metastatic cutaneous melanoma treated with immune checkpoint inhibitors or MAPK-inhibitors
Recent development of new therapies with immune checkpoint inhibitors (ICIs) and MAPK-inhibitors (MAPKis) have significantly improved the outcome in metastatic cutaneous melanoma (CM). However, therapy response is limited to subgroups of patients and clinically useful predictive biomarkers for treat...
ORGANISM(S): Homo sapiens (Human) 
2020-07-13 | PXD017201 | Pride
Ipilimumab Mapk-inhibitors Metastatic Plasma Mapk Trametinib Programmed cell death protein 1 Hirief Immune checkpoint inhibitors Lc-ms/ms Nivolumab Dabrafenib Melanoma Vemurafenib Biomarkers 
ProteomicsA proteogenomics study using the Seer Proteograph platform
In recent years, the development of molecular clocks has provided avenues for estimation of biological age. Traditionally, methylation-based epigenetic clocks have been the focus of age predictor developments, however individual proteomics, transcriptomics, and ATAC-Seq have provided avenues for oth...
ORGANISM(S): Homo sapiens (Human) 
2025-09-29 | PXD048709 | Pride
Gwas Proteomics Mass spectrometry Genome-wide association studies Protein quantitative trait loci Pqtl Proteograph™ workflow 
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