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ProteomicsPlasmodium falciparum Kelch13, Eps15 and Clathrin HC interactomes obtained using a dimerisation-induced quantitative BioID (DiQ-BioID)
In order to identify Kelch13 interaction partners in living P. falciparum parasites, we established a new type of BioID we termed dimerisation-induced quantitative BioID (DiQ-BioID) that takes advantage of the FKBP-FRB heterodimerisation system. For DiQ-BioID the target is endogenously tagged with F...
ORGANISM(S): Plasmodium falciparum 
2021-12-02 | PXD008219 | Pride
Eps15 Dimerisation-induced quantitative bioid (diq-bioid) Plasmodium falciparum Artemisinin resistance Vesicle trafficking Kelch13 Clathrin hc 
ProteomicsBioID of PAX8 in human ovarian cancer cells
Investigation of interactors for the human transcription factor PAX8 using BioID-based proximity labeling, as described in Galli et al.
ORGANISM(S): Homo sapiens (Human) 
2021-03-09 | PXD021709 | Pride
Bioid Prdm3 Ovarian cancer Pax8 
ProteomicsCapturig the Asc1p/RACK1 microenviroment at the head region of the 40S ribosome with quantitative BioID
The Asc1 protein of Saccharomyces cerevisiae is a Gβ-like scaffold protein considered to organize the local microenvironment at the head region of ribosomes in order to link mRNA translation with cellular signaling. In this study we used the in vivo protein labeling technique proximity-dependent Bio...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-10-09 | PXD005612 | Pride
Lc-msms Asc1p Rack1 Silac Signal transduction Saccharomyces cerevisiae Bioid Translation 
ProteomicsA well-controlled BioID design for endogenous bait proteins
The CRISPR/Cas9 revolution is profoundly changing the way life sciences technologies are used. Many assays now rely on engineered clonal cell lines to eliminate overexpression issues. Control cell lines are typically provided by non-engineered cells or by engineered clones implying a considerable ri...
ORGANISM(S): Homo sapiens (Human) 
2019-06-17 | PXD011702 | Pride
Protein protein interaction  bioid proximity labeling  (t2a) autocleavage  genome engineering  p53  base editor 
UnknownPRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα.
Not available
S-EPMC8220391 | biostudies-literature
ProteomicsDifferential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis
Using quantitative mass spectrometry approaches, we have interrogated the differences in p190BCR-ABL and p210BCR-ABL signaling. By integrating protein interaction data generated by the in vivo labeling technique of BioID with tyrosine phosphorylation profiling, we identified a set of molecules that ...
ORGANISM(S): Mus musculus (Mouse) 
2017-03-20 | PXD005209 | Pride
Phosphoproteomics Bcr-abl Mass spectrometry Leukemia P210 Bioid P190 
ProteomicsQuantitative Proteomics Identify a Novel DNA Repair-Dependent Role for Hepatocyte Nuclear Factor 4α
Hepatocyte nuclear factor 4 (HNF4) is a transcription factor that acts as a master regulator of genes in several endodermal-derived tissues, including the intestine in which it plays a central role during development and tumorigenesis. To better delineate the mechanisms by which HNF4 can interfere d...
ORGANISM(S): Homo sapiens (Human) 
2019-11-12 | PXD008365 | Pride
Gfp-trap Colorectal cancer Dna repair Human Silac Hnf4alpha Quantitative proteomics Bioid 
ProteomicsPlasmodium falciparum MSRP6-C-terminal domain (cd) interactome vs Maurer’s Cleft proteome and host cytosolic proteome using quantitative BioID
Interaction partners to a small part of the Maurer's clefts protein MSRP6 termed 'cd' were identified using BioID. The cd part recruits MSRP6 to the Maurer's clefts. To find the interactors of cd in isolation from MSRP6, this region was appended together with BirA* (for BioID) to a truncated version...
ORGANISM(S): Plasmodium falciparum 
2022-03-21 | PXD008208 | Pride
Plasmodium falciparum Quantitative bioid Protein export Maurer’s clefts Mrsp6 Pexel negative exported proteins (pneps) 
ProteomicsLamp1 BioID Protein Interaction Analysis
LC-MS/MS analysis of BioID-Lamp1 to characterize interactors.
ORGANISM(S): Mus musculus (Mouse) 
2026-06-01 | PXD063347 | Pride
Bioid Lamp1 Label free 
ProteomicsQuantitative RNA interactome capture (qRIC) identifies phosphorylation sites with regulatory potential - RBM20 BioID
RNA binding proteins (RBPs) are major regulators of gene expression at the post-transcriptional level. While many posttranslational modification sites in RBPs have been identified, less is known about how these modifications regulate RBP function. Here, we develop quantitative RNA-interactome captur...
ORGANISM(S): Homo sapiens (Human) 
2022-09-05 | PXD027138 | Pride
Lc-msms Rbm20 Silac Bioid 
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