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ProteomicsDesvenlafaxine promotes antibiotic resistance gene transfer in Acinetobacter baylyi ADP1
This dataset contains label-free quantitative proteomics data from Acinetobacter baylyi ADP1 cells exposed to the antidepressant desvenlafaxine at 10 mg/L and 50 mg/L, compared to untreated controls. Samples were processed by trypsin/Lys-C digestion and analyzed by LC-MS/MS on a Thermo Scientific Or...
ORGANISM(S): Acinetobacter sp. ADP1 
2026-09-29 | PXD077476 | Pride
Natural transformation Shotgun proteomics Acinetobacter baylyi Desvenlafaxine Antidepressant Label-free quantification Wastewater Antibiotic resistance Lc-ms/ms 
ProteomicsHigh-performance proteomics using nano-, capillary- and micro-flow chromatographic separations
In this study, we systematically evaluated the performance of μLC (50, 10 μL/min), capLC (5, and 1.5 μL/min), and nLC (0.3 μL/min ) flow-rates for proteome analysis using a Vanquish Neo HPLC coupled with a Q Exactive HF-X mass spectrometer. Serial dilutions of HeLa cell line digests were used for b...
ORGANISM(S): Homo sapiens (Human) 
2025-09-03 | PXD062536 | Pride
Kinobeads Lc-ms Phospho-proteomics Capillary-flow chromatography 
Proteomics15 cm Aurora Gen3 column benchmarking on an Exploris 480
A comprehensive proteome map is essential to elucidate molecular pathways and protein functions. Although great improvements in sample preparation, instrumentation and data analysis already yield-ed impressive results, current studies suffer from a limited proteomic depth and dynamic range there-for...
ORGANISM(S): Homo sapiens (Human) 
2024-02-13 | PXD045457 | Pride
Vanquish neo Orbitrap exploris 480 Trap-and-elute 
ProteomicsProteomic and Machine Learning Analyses Reveal the Mechanism of Baicalin in Inhibiting Biofilm Formation of Escherichia coli
This study investigated the proteomic profiles of Escherichia coli under different MBIC treatment levels using data-independent acquisition (DIA) quantitative proteomics. The dataset included five experimental groups (A-E), with four biological replicates per group, resulting in a total of 20 biolog...
ORGANISM(S): Escherichia coli 
2026-09-08 | PXD083748 | Pride
Dia Spectronaut Escherichia coli Astral Mbic Quantitative proteomics Lc-ms/ms 
ProteomicsSecretome translation shaped by Lysosomes and Lunapark-marked ER Junctions
Proteomic analysis of membrane fractions from U-2 OS control and Lunapark knockout cells to determine protein abundance per mRNA. Membrane proteins were extracted, digested, and analyzed by DIA LC–MS/MS on a Thermo Orbitrap Ascend Tribrid mass spectrometer with Vanquish Neo LC system
ORGANISM(S): Homo sapiens (Human) 
2025-12-29 | PXD068879 | Pride
Lysosome Lunapark Membrane proteome Er junctions Secretome mrna 
ProteomicsPlatelet carbamylated protein LC-MS/MS
Urea undergoes natural hydrolysis to form cyanate, a reactive species capable of inducing protein carbamylation. To determine whether elevated urea levels promote carbamylation of platelet proteins, whether this modification is mediated by the urea transporter B (UT-B) expressed on platelets, and wh...
ORGANISM(S): Mus musculus (Mouse) 
2026-05-28 | PXD066058 | Pride
Carbamylation Platelet Urea transporter b 
ProteomicsBenchmarking of 5.5 cm, 50 cm and 110 cm micropillar array columns as compared to packed bed columns
A comprehensive proteome map is essential to elucidate molecular pathways and protein functions. Although great improvements in sample preparation, instrumentation and data analysis already yield-ed impressive results, current studies suffer from a limited proteomic depth and dynamic range there-for...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2024-02-13 | PXD039576 | Pride
E. coli Yeast Direct injection Micropillar array chromatography Vanquish neo Hela Orbitrap exploris 480 Trap-and-elute 
MetabolomicsProteomic analysis of osteocyte line (MLO-Y4) with knockout of cystic fibrosis transmembrane conductance regulator (CFTR) or chloride deprivation treatment

Mass spectrometry–based proteomic analysis of an osteocyte line, MLO-Y4, was conducted to profile global protein expression changes under two experimental settings, 1) CRISPR-Cas9-based knockout of CFTR versus wild-type; 2) Cl- deprivation versus normal extracellular medium.

2026-03-27 | MTBLS14165 | MetaboLights
ProteomicsHuman platelet carbamylated protein LC-MS/MS
The concentration of blood urea is markedly elevated in patients with advanced chronic kidney disease (CKD). Urea undergoes natural hydrolysis to form cyanate, a reactive species capable of inducing protein carbamylation. To determine whether elevated urea levels promote carbamylation of platelet pr...
ORGANISM(S): Homo sapiens (Human) 
2026-05-28 | PXD067646 | Pride
Human Carbamylation Platelet Lc-ms/ms 
ProteomicsProteomics data of hepatocytes in metabolism dysfunction associated steatohepatitis.
In this study, metabolism dysfunction associated steatohepatitis (MASH) hepatocytes and normal hepatocytes were collected from three MASH mouse models and normal diet control fixed-frozen liver sections with laser capture microdissection (LCM), respectively. Protein was processed from these LCM sam...
ORGANISM(S): Mus Musculus 
2025-09-01 | PXD067929 |
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