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ProteomicsFeatureFinderIdentification (OpenMS) analysis of the iPRG-2015 dataset
Benchmark of FeatureFinderIdentification (FFId), a targeted feature detection algorithm for use in label-free quantification, developed in the OpenMS software framework. The dataset used for the evaluation comes from the iPRG-2015 study ("Differential abundance analysis in label-free quantitative pr...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-07-07 | PXD006336 | Pride
Iprg-2015 Label-free quantification Feature detection Benchmark Shotgun proteomics 
ProteomicsProteogenomics reanalysis of human testis data
Reanalysis of the human testis tissue dataset acquired for the Chromosome-centric Human Proteome Project (C-HPP; PRIDE project PXD002179), with a focus on identifying novel peptides for genome annotation.
ORGANISM(S): Homo sapiens (Human) 
2016-11-28 | PXD004785 | Pride
Human Proteogenomics Testis 
ProteomicsLC-MS/MS analysis of human cellular tRNA
The field of epitranscriptomics is growing in importance, with chemical modification of RNA being associated with a wide variety of biological phenomena. Mass spectrometry (MS) enables the identification of modified RNA residues within their sequence contexts, by using analogous approaches to shotgu...
ORGANISM(S): Homo sapiens (Human) 
2020-03-31 | PXD016328 | Pride
Rna Trna Epitranscriptomics 
ProteomicsLC-MS/MS analysis of human long ribosomal RNA
The field of epitranscriptomics is growing in importance, with chemical modification of RNA being associated with a wide variety of biological phenomena. Mass spectrometry (MS) enables the identification of modified RNA residues within their sequence contexts, by using analogous approaches to shotgu...
ORGANISM(S): Homo sapiens (Human) 
2020-03-31 | PXD016323 | Pride
28s 18s Rna Rrna Epitranscriptomics 
ProteomicsMS-based analysis of enzymatic methylation of an in vitro-transcribed lncRNA
The field of epitranscriptomics is growing in importance, with chemical modification of RNA being associated with a wide variety of biological phenomena. Mass spectrometry (MS) enables the identification of modified RNA residues within their sequence contexts, by using analogous approaches to shotgu...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-03-31 | PXD016308 | Pride
5-methylcytidine Rna Epitranscriptomics Lncrna M5c Nme1 
ProteomicsLC-MS/MS analysis of an intact synthetic microRNA
The field of epitranscriptomics is growing in importance, with chemical modification of RNA being associated with a wide variety of biological phenomena. Mass spectrometry (MS) enables the identification of modified RNA residues within their sequence contexts, by using analogous approaches to shotgu...
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2019-01-10 | PXD012094 | Pride
Rna Mirna Let-7 Epitranscriptomics 
ProteomicsUtx interactome in mouse myeloid progenitor cells
Immunoprecipitation of Utx followed by mass spectrometry analysis to identify Utx binding partners in mouse myeloid progenitor cells.
ORGANISM(S): Mus musculus (Mouse) 
2018-04-30 | PXD005011 | Pride
Protein interactions Affinity purification Utx Immunoprecipitation Interactome 
ProteomicsProteogenomics reanalysis of human testis data
Reanalysis of the human testis tissue dataset acquired for the Chromosome-centric Human Proteome Project (C-HPP; PRIDE project PXD002179), with a focus on identifying novel peptides for genome annotation.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-13 | MSV000083973 | MassIVE
Proteomicsyagsn2_712rpt
replicate enrichment for soluble proteins; 700-1200 m/z; Goo et al., 2003, Mol Cell Proteomics 2(8):512
ORGANISM(S): Halobacterium Nrc-1 (halobacterium) 
2011-12-31 | PAe000241 | PeptideAtlas
MetabolomicsPlant species richness elicits changes in the metabolome of grassland species via soil biotic legacy
Species-rich plant communities can induce unique soil biotic legacy effects through changing the abundance and composition of soil biota. These soil legacy effects can cause feedbacks to influence plant performance. In addition, soil biota can induce (defensive) secondary metabolites in shoots ...
2019-05-30 | MTBLS544 | MetaboLights
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