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ProteomicsBioID screening experiment to map proteins linked to PHYHD1
PHYHD1 is a 2-oxoglutarate-dependent dioxygenase. To shed light on the cellular function of human PHYHD1, we performed a BioID screening experiment to map proteins linked to PHYHD1 functionally. For that, we used HEK293T cells transiently expressing either BirA* or BirA*-tagged PHYHD1 in the absence...
ORGANISM(S): Homo sapiens (Human) 
2023-05-27 | PXD041792 | Pride
Hek293t Bioid Phyhd1 
ProteomicsBioId experiment to analyze interaction changes mediated by BRD9 in an acute myeloid leukemia cell line
BioId experiment to analyze interaction changes mediated by BRD9 in an acute myeloid leukemia cell line
ORGANISM(S): Homo sapiens (Human) 
2026-06-23 | PXD079670 | Pride
Brd9 Bioid 
ProteomicsProximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiation
Lysine specific demethylase 1 (LSD1/KDM1A) regulates gene expression as part of the CoREST complex, along with co-repressor of REST (CoREST) and histone deacetylase 1 (HDAC1). CoREST is recruited to specific genomic loci by components of the core complex and numerous transient interactions with chro...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2021-11-03 | PXD017344 | Pride
Embryonic stem cell Differentiation Bioid 
ProteomicsPlasmodium falciparum Kelch13, Eps15 and Clathrin HC interactomes obtained using a dimerisation-induced quantitative BioID (DiQ-BioID)
In order to identify Kelch13 interaction partners in living P. falciparum parasites, we established a new type of BioID we termed dimerisation-induced quantitative BioID (DiQ-BioID) that takes advantage of the FKBP-FRB heterodimerisation system. For DiQ-BioID the target is endogenously tagged with F...
ORGANISM(S): Plasmodium falciparum 
2021-12-02 | PXD008219 | Pride
Eps15 Dimerisation-induced quantitative bioid (diq-bioid) Plasmodium falciparum Artemisinin resistance Vesicle trafficking Kelch13 Clathrin hc 
ProteomicsTMEM16K is an interorganelle regulator of endosomal sorting.
Using proximity biotinylation proteomics based on TMEM16K/Ano10 (an endoplasmic reticulum lipid scramblase causative for spinocerebellar ataxia) BioID chimeras, we identify endosomal transport as a major functional cluster of interacting proteins.
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2020-05-30 | PXD018990 | Pride
Bioid Endosomal sorting Tmem16k 
ProteomicsThe MYO6 interactome using BioID
The intracellular function of myosin motors requires a number of adaptor molecules, which control cargo attachment, but also fine-tune motor activity in time and space. These motor-adaptor-cargo interactions are often weak, transient or highly regulated. To overcome these problems we use a proximity...
ORGANISM(S): Homo sapiens (Human) 
2018-02-27 | PXD008686 | Pride
Myo6 Bioid 
ProteomicsDifferential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis
Using quantitative mass spectrometry approaches, we have interrogated the differences in p190BCR-ABL and p210BCR-ABL signaling. By integrating protein interaction data generated by the in vivo labeling technique of BioID with tyrosine phosphorylation profiling, we identified a set of molecules that ...
ORGANISM(S): Mus musculus (Mouse) 
2017-03-20 | PXD005209 | Pride
Phosphoproteomics Bcr-abl Mass spectrometry Leukemia P210 Bioid P190 
ProteomicsIdentification of the Drosophila centriolar satellite proximity interactome by direct and indirect biotin proximity labeling
In this set of experiments we identified the main scaffolding component of centriolar satellites, PCM1 or Cmb in Drosophila as a proximity interactor of the centriolar structural protein Sas4 by BioID in S2 cells and subsequently explored the Cmb proximity interactome by direct TurboID in S2 cells a...
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2025-03-31 | PXD049372 | Pride
D. melanogaster  centrosome  centriolar satellites  interaction mapping  bioid  turboid 
ProteomicsIdentification of the potential receptor of Musclin on C3H10T1/2 cell using BioID assay
To identify the potential receptor mediating the effect of Musclin on thermogenic adipocytes, we conducted a proximity-dependent biotin identification (BioID) assay to obtain the interactome of Musclin on the plasma membrane of beige adipocytes.
ORGANISM(S): Mus musculus (Mouse) 
2023-06-13 | PXD041019 | Pride
Lc-msms Musclin Receptor Bioid 
ProteomicsPhosphoproteomics Identifies Dual-Site Phosphorylation in an Extended Basophilic Motif Regulating FILIP1-mediated Degradation of filamin-C FLNc d18-21 BioID experiment
FLNc, the muscle-specific isoform of the filamin family, is a multi-adaptor protein, comprising 1 amino-terminal actin-binding (ABD) domain followed by 24 immunoglobulin-like (Ig) domains. While FLNc can form homodimers via the last Ig-like domain and thus function as an actin-crosslinker like the o...
ORGANISM(S): Mus musculus (Mouse) 
2021-07-12 | PXD009159 | Pride
Bira Flnc Bioid Myotube 
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