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ProteomicsRNA interactome capture identifies key proteins for herpesviral gene expression
The primary mRNA sequence determines its secondary structure and the repertoire of interacting RNA binding proteins (RBPs). The resulting mRNA ribonucleoprotein complex (mRNP) then influences all stages of the life of an mRNA. Here, we determined the mRNP composition of individual Kaposi Sarcoma Her...
ORGANISM(S): Homo sapiens (Human) Human gammaherpesvirus 8 
2026-01-23 | PXD056253 | Pride
Kshv Au-rich sequences Srsf3 Rna-binding-proteins Rna interactome capture Rna stability Codon optimization Herpesviral gene expression Rbps Lytic transcripts Orf57 
ProteomicsSerial interactome capture of the human cell nucleus
Novel RNA-guided cellular functions are paralleled by an increasing number of RNA binding proteins (RBPs). We present “serial interactome capture” (serIC), a multiple purification procedure of UV-crosslinked poly(A)-RNA-protein complexes that enables global RBP detection with maximal specificity. We...
ORGANISM(S): Homo sapiens (Human) 
2016-03-31 | PXD003664 | Pride
Rna binding proteins  interactome capture  nuclear rna binding proteome 
ProteomicsSerial interactome capture of the human cell nucleus
Novel RNA-guided cellular functions are paralleled by an increasing number of RNA binding proteins (RBPs). We present “serial interactome capture” (serIC), a multiple purification procedure of UV-crosslinked poly(A)-RNA-protein complexes that enables global RBP detection with maximal specificity. We...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-10-21 | MSV000080265 | MassIVE
ProteomicsRNA interactome capture in Escherichia coli globally identifies RNA-binding proteins
RNA-binding proteins (RPBs) are deeply involved in many fundamental cellular processes in bacteria and are vital for their survival. Despite this, few studies have so far been dedicated to globally identifying bacterial RBPs. We have adapted the RNA interactome capture (RIC) technique, originally de...
ORGANISM(S): Escherichia coli 
2023-03-30 | PXD032939 | Pride
Lc-ms Rna interactome capture Escherichia coli 
OtherInsights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Data from ProteomeXchange, PXD ID: PXD002880. Experiment: KS_A4_3, file: folder summary. Published as part of Cell. 2012 Jun 8;149(6):1393-406 . From the Abstract: {{i}} RNA-binding proteins (RBPs) determine RNA fate from synthesis to decay. Employing two complementary protocols for covalent UV cro...
ORGANISM(S): Homo_sapiens_viruses, Human_female 
GPM11210041750 | GPMDB
Resource Reanalysis 
ProteomicsEnhanced RNA Interactome capture (eRIC) and RNA Interactome capture (RIC) of Jurkat cells (DSMZ, ACC-282).
1.0 – 1.3 x 10e8 proliferating Jurkat cells at a density of about 1-1.5 x 10e6 cells/mL were employed per sample. Cells were irradiated or not with 254 nm UV light and subjected to eRIC or RIC to determine the RNA-bound proteome. Data correspond to two biologically independent experiments.
ORGANISM(S): Homo sapiens (Human) 
2018-09-03 | PXD010941 | Pride
Ric Eric Rna interactome Rbps Rbpome Rna-binding proteins 
ProteomicsProteome-wide quantitative RNA interactome capture (qRIC) identifies phosphorylation sites with regulatory potential in RBM20
Cellular mRNA-binding proteins (mRBPs) are major regulators of gene expression at the post-transcriptional level. While many posttranslational modification sites in mRBPs have been identified, little is known about how these modifications regulate mRBP function. Here, we developed quantitative RNA-i...
ORGANISM(S): Homo sapiens (Human) 
2022-09-05 | PXD030352 | Pride
Proteomics Cell signaling Rbm20 Phosphorylation Rna-binding proteins Alternative splicing Rna-interactome capture Cardiomyopathy 
ProteomicsRNA interactome capture analysis of mouse male germ cells
Mass spectrometry data of RNA interactome capture (RIC) assay for STA-PUT purified mouse primary male germ cells, including spermatogonia (SG), pachytene spermatocyte (pSC) and round spermatid (rST)
ORGANISM(S): Mus musculus (Mouse) 
2025-10-29 | PXD043074 | Pride
Spermatogonia  pachytene spermatocyte  round spermatid  mouse  rna-interactome capture  proteomics 
ProteomicsProfile of the SARS-CoV-2 RNA interactome
SARS-CoV-2 is an RNA virus whose success as a pathogen relies on its ability to repurpose host RNA-binding proteins (RBPs) to form its own RNA interactome. Here, we developed and applied a robust ribonucleoprotein capture protocol to uncover the SARS-CoV-2 RNA interactome. We report 109 host factors...
ORGANISM(S): Homo sapiens (Human) Chlorocebus sabaeus 
2021-04-28 | PXD024808 | Pride
Hcov-oc43 Sars-cov-2 Hct-8 Vero Rnp Rna interactome Rbp 
ProteomicsIdentification of RNA binding Proteins in A. thaliana leaves
The goal of this MS project was to identify the RNA binding proteins in Arabidopsis thaliana leaves. To this end RBPs were isolated by a technique termed ‘RNA interactome capture’ and the captured proteins identified by mass spectrometry.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-05-26 | PXD018141 | Pride
Uv cross linking Rbp Rna interactome capture Rna binding proteins 
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