Thermofisher qexactive hf

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Proteomics (89)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (89)
Allexis (89)
Canis lupus familiaris (89)
Carya cathayensis (89)
Clostridioides difficile 630 (89)
Cyanophora paradoxa (89)
Ensifer adhaerens (89)
Enterococcus faecalis (89)
Globicatella sanguinis (89)
Histomonas meleagridis (89)
Human immunodeficiency virus 1 (89)
Listeria monocytogenes (89)
Marchantia polymorpha (89)
Methylohalobius crimeensis 10Ki (89)
Mus musculus (89)
Mycobacterium tuberculosis (89)
Ophrys garganica (89)
Ophrys sphegodes (89)
Physcomitrium patens (89)
Pseudomonas aeruginosa SJTD-1 (89)
Pseudomonas putida KT2440 (89)
Rattus norvegicus (89)
Rhizobium sp. Leaf68 (89)
Schizosaccharomyces pombe 927 (89)
Schizosaccharomyces pombe 972h- (89)
Shigella (89)
Sphingomonas sp. Leaf257 (89)
Staphylococcus aureus (89)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (89)
Vitis vinifera (89)

Repository

pride (89)

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Cell culture (21)
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Disease

Cervix carcinoma (7)
Cardiovascular system disease (2)
Acute leukemia (1)
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Bone marrow (1)
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Giardiasis (1)
Heart septal defect (1)
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Mitochondrial metabolism disease (1)
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Parkinson's disease (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (89)
Shotgun proteomics (63)
Affinity purification coupled with mass spectrometry proteomics (14)
Bottom-up proteomics (10)
Data-dependent acquisition (8)
SWATH MS (6)
Gel-based experiment (5)
Top-down proteomics (4)
Data-independent acquisition (3)
Affinity proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Publication Date

2023 (17)
2021 (16)
2022 (13)
2024 (12)
2026 (8)
2019 (8)
2025 (6)
2020 (5)
2018 (3)
2017 (1)

Lab affiliation

Institute for Vascular Signalling, Centre for Molecular Medicine, Goethe University, Frankfurt am Main, Germany. (4)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany Frankfurt Cancer Institute, Frankfurt am Main, Germany Cardio-Pulmonary Institute, Frankfurt am Main, Germany (2)
Institute of Biochemistry II, Goethe University, Medical School, Frankfurt, Germany (2)
Laboratory of Ageing and Pharmacology, Kolling Institute, The University of Sydney (2)
Universitätsklinikum Frankfurt am Main, Institut für Biochemie II (2)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Adele Niessen Professor of Ophthalmology Vice Chair for Research FM Kirby Center for Molecular Ophthalmology Scheie Eye Institute University of Pennsylvania (1)
Albert Einstein College of Medicine (1)
Biological Sciences Division, Pacific Northwest National Laboratory (1)
Buchmann Institute for Molecular Life Sciences, Pharmaceutical Chemistry, Goethe-University Frankfurt am Main, Max-von-Laue-Strasse 15. R. 3.652, D-60438 Frankfurt am Main. (1)
Cell Pathology Division 816F/ARC Children’s Hospital of Philadelphia The University of Pennsylvania 3615 Civic Center Blvd. 816F/ARC Philadelphia, PA 19104 Office: 267-426-2839 Fax: 267-426-5165 (1)
Centre de Recherche en Biologie cellulaire de Montpellier (CRBM), CNRS UMR 5237, Montpellier University, France (1)
Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Crown Street, L697ZB, Liverpool, United Kingdom (1)
Centre of New Technologies, University of Warsaw, S. Banacha 2c, 02-097 Warsaw, Poland (1)
Clinical Diagnostic Laboratory Department of Clinical Veterinary Medicine Vetsuisse Faculty University of Bern Bern Switzerland (1)
Clinical Diagnostic Laboratory, Department of Clinical Veterinary Medicine, Vetsuisse Faculty, University of Bern, Bern, Switzerland. (1)
Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Munich, Member of the German Center for Lung Research (DZL), Germany (1)
Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Munich, Member of the German Center for Lung Research (DZL), Germany. (1)
Department of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, Maurice Wohl Clinical Neuroscience Institute, King’s College London, 125 Coldharbour Lane, London SE5 9NU, U.K (1)
Department of Biochemistry and Molecular Biology, Infection and Immunity theme, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia (1)
Department of Biochemistry and Molecular Biology, Protein Research group, University of Southern Denmark, Odense, Denmark (1)
Department of Biology, Chair of Molecular Genetics and Microbiology, University of Ljubljana, Slovenia (1)
Department of Chemistry and Biochemistry University of Bern Freiestrasse 3 3012 Bern Switzerland (1)
Department of Clinical Laboratory The Second Affiliated Hospital Guizhou University of Traditional Chinese Medicine (1)
Department of Developmental Genetics, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany (1)
Department of Experimental Parasitology LMU München Lena-Christ-Str. 48 82152 Planegg-Martinsried Telefon: +49 (0) 89 2180 - 3622 Fax: +49 (0) 89 2180 - 3623 E-Mail: markus.meissner@lmu.de (1)
Department of Medical Biochemistry and Biophysics, Division of Molecular Metabolism, Karolinska Institutet, Solnavägen 9, 171 65 Solna, Sweden Max Planck Institute Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm, Sweden (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17165, Sweden. (1)
Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Molecular Medicine, Max Planck Institute of Biochemistry, Martinsried, Germany (1)

Modification

4x(15)N labeled L-arginine (1)

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CNNM proteins selectively bind to the TRPM7 channel to stimulate divalent cation entry into cells

Magnesium is essential for cellular life, but how it is homeostatically controlled still remains poorly understood. Here we report that members of CNNM family, which have been controversially implicated in both cellular Mg2+ influx and efflux, selectively bind to the TRPM7 channel to stimulate dival...

ORGANISM(S): Homo sapiens (Human)

2021-11-15 | PXD026635 | Pride

Trpm7 cnnm3 cnnm4 cnmm2

human glioma cell-line proteomics upon treatment with different drugs

Increasing evidence suggests that induction of lethal autophagy carries potential significance for the treatment of glioblastoma (GBM). In continuation of our previous work, we investigated if autophagy-inducing compunds can trigger ATG-dependent cell death in human MZ-54 GBM cells and which pathway...

ORGANISM(S): Homo sapiens (Human)

2021-02-26 | PXD015074 | Pride

Glioma Tmt10 Qexactive hf Human

Compositional analysis of venom in three species of Indian cobra (Naja) and their cross-reactivity with Indian polyvalent Antivenom

The study represents genus-wide proteomics analysis of venom composition across Naja (N. naja, N. oxiana and N. kaouthia) found in mainland India. Venoms from Naja species were fractionated using RP-HPLC and subjected to MS/MS analysis. Indian polyvalent antivenom immunoprofiling was performed again...

ORGANISM(S): Naja naja Naja oxiana Naja kaouthia

2023-05-10 | PXD027361 | Pride

Naja oxiana Naja naja Polyvalent antivenom Thermofisher qexactive hf Antivenomics Naja kaouthia Venomics Venom variation Snakebites

Proteomics of MSC-derived exosomes upon Plekhm1-KO

Leukemia cells instruct their surrounding bone marrow microenvironment (BMM) rendering it hospitable to leukemia cell survival. Conversely, how cells of the BMM influence leukemia progression is less well understood. Pleckstrin homology domain family M member 1 (PLEKHM1) serves as a hub between fusi...

ORGANISM(S): Mus musculus (Mouse)

2023-01-16 | PXD027041 | Pride

Exosome Mesenchymal stromal cells Lfq Qexactive hf

Proteomics analysis of a new Cas9-targeting PROTAC molecule

Scientists have developed several methods to control the activity of Cas protein in a timely way and hence reduce off-target effects, including anti-CRISPR proteins and small molecule inhibitors. The PROTAC is a new conception of using the natural ubiquitin-proteasome system to degrade the protein o...

ORGANISM(S): Homo sapiens (Human)

2022-10-18 | PXD022199 | Pride

Crispr-cas9 Qexactive hf Protac Lc-ms/ms

An interphase actin wave promotes mitochondrial content mixing and 2 organelle homeostasis

Across the cell cycle, mitochondrial dynamics are regulated by a cycling wave of actin polymerization/depolymerization. In metaphase, this wave induces the assembly of actin comet tails on mitochondria that propel these organelles to drive spatial mixing,resulting in their equitable inheritance by d...

ORGANISM(S): Homo sapiens (Human)

2024-06-23 | PXD050085 | Pride

Fmnl1 Actin Mitochondrial fission Homeostasis

Proteomic analysis of human PARK2 knockout iPSC-derived neurons

Mitochondrial dysfunction plays a major role in the pathogenesis of sporadic Parkinson’s disease (PD) and familial PD caused by mutations in the PARK2 gene. The protein, parkin, is vital for mitochondrial function, but the lack of key PD phenotypes in PARK2 knockout (KO) rodent models has hindered i...

ORGANISM(S): Homo sapiens (Human)

2019-09-03 | PXD007871 | Pride

Lc-msms Qexactive-hf Parkinson's disease Human ips cells

BAG3 suppresses ciliogenesis by regulating levels of OFD1

By regulating several hallmarks of cancer, BAG3 exerts oncogenic functions in a wide variety of malignant diseases including glioblastoma (GBM) and triple-negative breast cancer (TNBC). Here we performed global proteomic/phosphoproteomic analyses of Crispr/Cas9-mediated isogenic BAG3 knockouts of th...

ORGANISM(S): Homo sapiens (Human)

2021-06-21 | PXD024802 | Pride

Phosphoproteome Ofd1 Ciliogenesis Bag3 Glioblastoma cells Proteome

Functional translatome proteomics reveal converging regulation by mTORC1 and eIF2α

Regulation of the translatome is essential during stress. However, the precise sets of translational targets regulated by the key translational stress responses –integrated stress response (ISR) and mTORC1 – remain elusive. We developed multiplexed enhanced protein dynamics (mePROD) proteomics, comb...

ORGANISM(S): Homo sapiens (Human)

2019-12-06 | PXD014377 | Pride

Human Tmt Translation Pulsed silac

Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α

ORGANISM(S): Homo sapiens (Human)

2019-12-09 | PXD015438 | Pride

Proteomics Tmt Psilac Translation

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89 Results

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